View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_37 (Length: 239)
Name: NF0498_low_37
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36196487 - 36196273
Alignment:
| Q |
1 |
catattgtagctgttttattttcaaattctaatttagattttttaatattaacttggagggcaaggctatgctttgacctgataaataattgtataattg |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36196487 |
catattgtagctgttttattttcaaattttaatttagattttttaatattaacttggagtgcaaggctatgctttgacctgataaataattgtataattg |
36196388 |
T |
|
| Q |
101 |
taaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196387 |
taaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtag |
36196288 |
T |
|
| Q |
201 |
tctgtttggttgatg |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
36196287 |
tctgtttggttgatg |
36196273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36209610 - 36209405
Alignment:
| Q |
1 |
catattgtagctgttttattttcaaattctaatttagattttttaatattaacttggagggcaaggctatgctttgacctgataaataattgtataattg |
100 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36209610 |
catattgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctttgacctgataaataattgtataatta |
36209511 |
T |
|
| Q |
101 |
taaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtag |
200 |
Q |
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| T |
36209510 |
t---------tgtacaatgtttgaaatctcaaaattttaggagatgttttgtcgatttttctacacagatccttggaatacaagttttataatttattag |
36209420 |
T |
|
| Q |
201 |
tctgtttggttgatg |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
36209419 |
tctgtttggttgatg |
36209405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 36184226 - 36184044
Alignment:
| Q |
1 |
catattgtagctgttttattttcaaattctaatttagattttttaatattaacttggagggcaaggctatgcttt-gacctgataaataattgtataa-t |
98 |
Q |
| |
|
||||||||| |||||||||||||||| | | |||||| |||| || |||||||| ||| | ||||||||| ||| |||| ||||||||||||||||| | |
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| T |
36184226 |
catattgtaactgttttattttcaaagttaagtttagaattttgaaaattaactttgagtgtaaggctatgtttttgaccggataaataattgtataaat |
36184127 |
T |
|
| Q |
99 |
tgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacagatccttgcaatac |
181 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
36184126 |
tgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtctatttttctacacagatccttggaatac |
36184044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 36188166 - 36188033
Alignment:
| Q |
1 |
catattgtagctgttttattttcaaattctaatttagattttttaatattaacttggagggcaaggctatgctttgacctgataaataattgtataattg |
100 |
Q |
| |
|
||||||||| |||||| ||||||||| | ||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
36188166 |
catattgtaactgtttaattttcaaagtttaatttagaattttgaatattaacttggagtgcaaggctatggtttgacctgataaataattgtataattc |
36188067 |
T |
|
| Q |
101 |
taaaggcttttgtactatgtttgaaatctcaata |
134 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||| |
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|
| T |
36188066 |
tgaagtcttttgtactatgtttgaaatctcaata |
36188033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 36185568 - 36185468
Alignment:
| Q |
63 |
aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttct |
162 |
Q |
| |
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||||||||| ||| |||| |||| ||||| | |||||||| ||||||| |||||||||| || ||||||||||||| || ||||||| ||||||||| |
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| T |
36185568 |
aaggctatgtttttacctcataactaattatgtaattgtactagcttttgcactatgtttgcaaagtcaatattttaggggaggttttgttgatttttct |
36185469 |
T |
|
| Q |
163 |
a |
163 |
Q |
| |
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| |
|
|
| T |
36185468 |
a |
36185468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 36201857 - 36201749
Alignment:
| Q |
15 |
tttattttcaaattctaatttagattttttaatattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgta |
114 |
Q |
| |
|
|||||||||||| | | ||||||| |||| ||| | | || ||| ||||||||||| ||| ||| ||||||||||| | |||||||| ||||||||||| |
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|
| T |
36201857 |
tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaaccagataaataattttgtaattgtataggcttttgta |
36201758 |
T |
|
| Q |
115 |
ctatgtttg |
123 |
Q |
| |
|
| ||||||| |
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|
| T |
36201757 |
cgatgtttg |
36201749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 36203209 - 36203113
Alignment:
| Q |
63 |
aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttt |
159 |
Q |
| |
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||||||||| ||| | |||||||||||||| |||||||| | ||||||||||||| |||| | ||||||||| || ||||||||||| ||||| |
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|
| T |
36203209 |
aaggctatgtttttaactgataaataattgcgtaattgtacaagcttttgtactatttttggcgtgtcaatatttatggggatgttttgtctatttt |
36203113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 36214316 - 36214245
Alignment:
| Q |
54 |
ttggagggcaaggctatgctttgacctgataaataattgtataattgtaaag--gcttttgtactatgtttg |
123 |
Q |
| |
|
|||||| | ||| ||||| ||||||||||||||||||| | ||||||||| | |||||||||||||||||| |
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|
| T |
36214316 |
ttggagtgtaagtctatgttttgacctgataaataattatgtaattgtaagggcgcttttgtactatgtttg |
36214245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 36215673 - 36215577
Alignment:
| Q |
108 |
ttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacaga-tccttgcaatacgagttttataatttagtagtct |
203 |
Q |
| |
|
|||||||||||||||| || ||||||||| | | || |||||||| |||||||| | | | |||||| ||||| ||||||||||||||||||||| |
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|
| T |
36215673 |
ttttgtactatgtttgggatgtcaatatttcaagggaggttttgtccatttttctgtagaaattccttggaatacaagttttataatttagtagtct |
36215577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 36208720 - 36208659
Alignment:
| Q |
147 |
ttttgtcgatttttctacacagat-ccttgcaatacgagttttataatttagtagtctgttt |
207 |
Q |
| |
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|||||| |||||||||| ||| || |||||| |||| |||||||||||||||| |||||||| |
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|
| T |
36208720 |
ttttgttgatttttctatacaaattccttgctatacaagttttataatttagtggtctgttt |
36208659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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