View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_4 (Length: 545)
Name: NF0498_low_4
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 41035920 - 41036460
Alignment:
| Q |
1 |
tcaataccaacaatggtattccaattaggccaaccttcgtaaacctctataaatggcctgaataatcagacatagaatttgtgaagactatgaactgtaa |
100 |
Q |
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| T |
41035920 |
tcaataccaacaatggtattccaattaggccaaccttcgtaaacctctataaatggcctgaataatcagacgtagaatttgtgaagactatgaactgtaa |
41036019 |
T |
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| Q |
101 |
aaattatcgtgatggagctgaagttgatagtctctcttgcaggcaaatgtattttaggagctacaaattctcaaggaagaaattaagtatcactgggaag |
200 |
Q |
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| T |
41036020 |
aaattatcgtgatggagctgaagttgatagtctctcttgcaggcaaatgtatttcaggagctacaaattctcaaggaagaaattaagtatcactgggaag |
41036119 |
T |
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| Q |
201 |
agcataaaatgtttcagaagtgtaaaggagagtgtggtttgtgccagcaatagattaaatcataatattaagggtaattgtaagattctagggaatatta |
300 |
Q |
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| T |
41036120 |
agcataaaatgtttcagaagtgtaaaggagggtgtggtttgtgccagcaatagattaaatcataatattaagggtaattgtaagattctagggaatatta |
41036219 |
T |
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| Q |
301 |
ctcatgctgctgtgtcagtctattgtagattgctttctcgatcagtctgataaggtccacatggctcgtcatgatttctattgtttcgtggtttcttttt |
400 |
Q |
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| T |
41036220 |
ctcatgctgctgtgtcagtctattgtagattgctttctcg----gtctgataaggtccacatggctcgtcatgatttctattgtttcgtggtttcttttt |
41036315 |
T |
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| Q |
401 |
gcggcagatcactgtccaatatgtgtaaggatcaaagcagtattttatagtttctgttaaatcacagtcgattggcatatgaatgcaagaatagtgagtg |
500 |
Q |
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| T |
41036316 |
gcggtagatcactgtccaatatgtgtaaggatcaaagcagtattttatagtttctgttaaatcacagtcgattggcatatgaatgcaagaatagcgagtg |
41036415 |
T |
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| Q |
501 |
tagaagtgaaactaaacatataggctatcatacatcaatttctcc |
545 |
Q |
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| T |
41036416 |
tagatgtgaaactaaacatataggctatcatacatcaatttctcc |
41036460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 535
Target Start/End: Original strand, 41030337 - 41030863
Alignment:
| Q |
17 |
tattccaattaggccaaccttcgtaaacctctataaatggcctgaataatcagacatagaatttgtgaagactatgaactgtaaaaattatcgtgatgga |
116 |
Q |
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| T |
41030337 |
tattccgattagaccaaacttcacaaacctctacaagtggccagaat---cagaagtagaatttgtgaagactatgaactcaaacaattatcgtgacaga |
41030433 |
T |
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| Q |
117 |
gctgaagttgatagtctctcttgcaggcaaatgtattttaggagctacaaattctcaaggaagaaattaagtatcactgggaagagcataaaatgtttca |
216 |
Q |
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| T |
41030434 |
gttgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttca |
41030533 |
T |
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| Q |
217 |
gaagtgtaaaggagagtgtggtttgtgccagcaatagattaaatcataatattaagggtaattgtaagattctaggga---------atattactcatgc |
307 |
Q |
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| ||| |||| ||||||||| ||||||| ||||||| |||| | ||||| |||||||||| ||||||||| |||| |||| |||||||| |
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| T |
41030534 |
gcagtttaaaagagagtgtgatttgtgctagcaatatattatgttgtaatagtaagggtaatcgtaagattcctgggagggctaagcatatcactcatgc |
41030633 |
T |
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| Q |
308 |
tgctgtgtcagtctattgtagattgctttctcgatcagtctgataaggtccacatggctcgtcatgatttctattgtt---tcgtggtttctttttgcgg |
404 |
Q |
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| T |
41030634 |
tgctgtgtcagtctaccataggttgctttctcga----tctgataaggtccatgtggctcgtcacgatttctaatgctgcgtagttgtttgtttttgtgg |
41030729 |
T |
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| Q |
405 |
cagatcactgtccaatatgtgtaaggatcaaagcagtattttatagtttctgttaaatcacagtcgattggcatatgaatgcaagaatagtgagtgtaga |
504 |
Q |
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| T |
41030730 |
tggatcagtttccgatacgcataaggatcaaagctatagtttgtagtttctattaaatcactgttgattggcatatgaacgcgagtatagtgagtgtgga |
41030829 |
T |
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| Q |
505 |
---agtgaaactaaacatataggctatcatacat |
535 |
Q |
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| T |
41030830 |
actagtgaaatcaaacatagaggctatcatacat |
41030863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 214
Target Start/End: Complemental strand, 40636942 - 40636804
Alignment:
| Q |
72 |
atagaatttgtgaagactatgaactgtaaaaattatcgtgatggagctgaagttgatagtctctcttgcaggcaaatgtattttaggagctacaaattct |
171 |
Q |
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| T |
40636942 |
atagaatttgtgaagacta--aactctaacgattatcataaaggagttgaaattgatggcctct-ttgcaggcaaatgtatttgaggagctaaatattct |
40636846 |
T |
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| Q |
172 |
caaggaagaaattaagtatcactgggaagagcataaaatgttt |
214 |
Q |
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| T |
40636845 |
caaggaa-aaagtaagtatcactgggaataacataaaatgttt |
40636804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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