View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_6 (Length: 483)
Name: NF0498_low_6
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_6 |
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| [»] scaffold0653 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 271 - 455
Target Start/End: Complemental strand, 9244453 - 9244269
Alignment:
| Q |
271 |
tcaatccaatatctttttctctttctgaattcaatccaatgtacattttctattttttccgttggagggagagtgnnnnnnncacgaaagttagagaaat |
370 |
Q |
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| T |
9244453 |
tcaatccaatatctttttctcattctgaattcaatccaatgtacattttctattttttctgttggagggagagtgtttttttcacgaaagttagagaaat |
9244354 |
T |
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| Q |
371 |
tacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaattaat |
455 |
Q |
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| T |
9244353 |
tacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaattaat |
9244269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 9248579 - 9248388
Alignment:
| Q |
268 |
tattcaatccaatatctttttctctttctgaattcaatccaatgtacattttctattttttccgtt----ggagggagagtgnnnnnnncacgaaagtta |
363 |
Q |
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| T |
9248579 |
tattcaatccaatatttttctctctttctcaattcaatccaatgtacattttctatttattttttttgcaggagggagagtgtttttttcacgaaagttg |
9248480 |
T |
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| Q |
364 |
gagaaattacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaattaat |
455 |
Q |
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| T |
9248479 |
gagaaattgcatcttcttatttatgttttcataaattctacatgtgagtattgaattgtttgttttttatccaaacttcatattgaattaat |
9248388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 9248855 - 9248706
Alignment:
| Q |
11 |
cacagacgaaggtagcgtgtgactgaaagtatcccaatggcactgatgacg-tcagttggtggttggccttaagggcctgagagcactaccaccaaccat |
109 |
Q |
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| T |
9248855 |
cacaaacgaaggtggcgtgtgactgaaaatatcccaatggcactaatgacggtcagttggttgttggccttaagggcccgagagcactaccactaacctt |
9248756 |
T |
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| Q |
110 |
ccatctacatcgtatataattggttttgatttaaatggagtgagagagag |
159 |
Q |
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| T |
9248755 |
ggatctacatcgtatataattggttttgatttaaatggagagagagagag |
9248706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 9244639 - 9244493
Alignment:
| Q |
11 |
cacagacgaaggtagcgtgtgactgaaagtatcccaatggcactgatgacg-tcagttggtggttggccttaagggcctgagagcactaccaccaaccat |
109 |
Q |
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| T |
9244639 |
cacaaacgaaggtggcgtgtgactgaaagtatcccaatggcactaatgacggtcagttggtggttggccttaagggcccgagagcactaccaataacctt |
9244540 |
T |
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| Q |
110 |
ccatctacatcgtatataattggttttgatttaaatggagtgagaga |
156 |
Q |
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| T |
9244539 |
ggatatacatcgtatataattggttttcatttaaatggagagagaga |
9244493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 9248688 - 9248641
Alignment:
| Q |
159 |
gttttcttggcaccttgaaatttacatgtttcttaaatttagctttag |
206 |
Q |
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| T |
9248688 |
gttttgttggcacccagaaatttacatgtttcttaaatttagctttag |
9248641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 270 - 455
Target Start/End: Original strand, 5311 - 5496
Alignment:
| Q |
270 |
ttcaatccaatatctttttctctttctgaattcaatccaatgtacattttctattttttccgttggagggagagtgnnnnnnncacgaaagttagagaaa |
369 |
Q |
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| T |
5311 |
ttcaatccaata-ctttttctcattctgaattcaatccaatgtacattttctattttttctgttggagggagagtgtttttttcacgaaagttagagaaa |
5409 |
T |
|
| Q |
370 |
ttacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtg-ttttatccaaacttgatattgaattaat |
455 |
Q |
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| T |
5410 |
ttacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgtttttatccaaacttgatattgaattaat |
5496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 5122 - 5268
Alignment:
| Q |
11 |
cacagacgaaggtagcgtgtgactgaaagtatcccaatggcactgatgacg-tcagttggtggttggccttaagggcctgagagcactaccaccaaccat |
109 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |||| | |
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| T |
5122 |
cacaaacgaaggtggcgtgtgactgaaagtatcccaatggcactaatgacggtcagttggtggttggccttaagggcccgagagcactaccaataacctt |
5221 |
T |
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| Q |
110 |
ccatctacatcgtatataattggttttgatttaaatggagtgagaga |
156 |
Q |
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| T |
5222 |
ggatatacatcgtatataattggttttcatttaaatggagagagaga |
5268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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