View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_7 (Length: 442)
Name: NF0498_low_7
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 69 - 308
Target Start/End: Complemental strand, 17356249 - 17356012
Alignment:
| Q |
69 |
atgaatttagaataatttttcatgaaaaatccaaaacaattatatgctgcttttctacaaacaataaggtgaaggaaaacaacaaatcacgaaatcgaag |
168 |
Q |
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| T |
17356249 |
atgaatttagaataatttttcatgaaaaatccaaaacaattat--gctgcttttgtacaaacaagaaggtgaagaaaaacaacaaatcacgaaatcgaag |
17356152 |
T |
|
| Q |
169 |
ttcgcatgaagcacacaataatacaaatcaacaaaatctccaaaatcccaaaacattgatttaactcaataaaatcaatttcaataataaaattctagca |
268 |
Q |
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| T |
17356151 |
ttcgcatgaagcacacaataatacaaatcaacaaaatctccaaaatcccaaaatattgatttaactcaataaaatcaatttcaataataaaattctagca |
17356052 |
T |
|
| Q |
269 |
aaaacatataacacaagcatcacaacaaaccctaaaagat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
17356051 |
aaaacatataacacaagcatcacaacaaaccctaaaagat |
17356012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 114 - 272
Target Start/End: Original strand, 36619953 - 36620110
Alignment:
| Q |
114 |
gctgcttttctacaaacaataaggtgaaggaaaacaacaaatcacgaaatcgaagttcgcatgaagcacacaataatacaaatcaacaaaatctccaaaa |
213 |
Q |
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||||||| | || ||||||||| |||||||||||||||||| | | |||| ||||||| |||||| |||| || |||| || ||||||||| || ||| |
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| T |
36619953 |
gctgcttctgtagaaacaataaagtgaaggaaaacaacaaaacgcaaaattgaagttcacatgaaacacaaaacaataaaattcaacaaaaaaacc-aaa |
36620051 |
T |
|
| Q |
214 |
tcccaaaacattgatttaactcaataaaatcaatttcaataataaaattctagcaaaaa |
272 |
Q |
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||||||||| | |||| | ||||||||||| ||||||||||| ||| ||| |||||||| |
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| T |
36620052 |
tcccaaaacctagattcagctcaataaaattaatttcaataaaaaatttcaagcaaaaa |
36620110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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