View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_8 (Length: 419)
Name: NF0498_low_8
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 30 - 414
Target Start/End: Original strand, 37619503 - 37619887
Alignment:
| Q |
30 |
taaacaacccaaaaagagcaactttaatgtgcccttagggctgtctcattacaaatatctacagaataagtaaaaaattcaattaagattactgatatct |
129 |
Q |
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| T |
37619503 |
taaacaacccaaaaagagcaactttaatgtgcccttagggctgtctcattacaaatatctacagaataagtaaaaaattcaattaagattactgatatct |
37619602 |
T |
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| Q |
130 |
tactaattttgatgttcaggaggaacaagaaagaggagataatgctagtagtatacaatgcatgatgagagagaataatatttcagatgaaaatgaagga |
229 |
Q |
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| T |
37619603 |
tactaattttgatgttcaggaggaacaagaaagaggagataatgctagtagtatacaatgcatgatgagagagaataatatttcagatgaaaatgaagga |
37619702 |
T |
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| Q |
230 |
agaatacacataaggatgctactagggaatttgtggagagagctgaatggtcttgccatgaccaaaacgatacctttgtctgttgtcaaagcttctctta |
329 |
Q |
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| T |
37619703 |
agaatacacataaggatgctactagggaatttgtggagagagctgaatggtcttgccacgaccaaaaccatacctttgtctgttgtcaaagcttctctta |
37619802 |
T |
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| Q |
330 |
atatggcaagaactgctcaagttatttatcaacatggagatgatcaaagcacatttactgttgatgactatgtgcaaacattgat |
414 |
Q |
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| T |
37619803 |
atatggcaagaactgctcaagttatttatcaacatggagatgatcaaagcacatttactgttgatgactatgtgcaaacattgat |
37619887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 124 - 414
Target Start/End: Original strand, 37627897 - 37628187
Alignment:
| Q |
124 |
atatcttactaattttgatgttcaggaggaacaagaaagaggagataatgctagtagtatacaatgcatgatgagagagaataatatttcagatgaaaat |
223 |
Q |
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|||| ||||||||||| |||| ||||||||||||||||||| ||||||||| | || ||||||||| |||||| ||| ||||||||||||||||||||| |
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| T |
37627897 |
atatattactaatttttatgtctaggaggaacaagaaagaggggataatgcttgcagcatacaatgcttgatgaaagaaaataatatttcagatgaaaat |
37627996 |
T |
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| Q |
224 |
gaaggaagaatacacataaggatgctactagggaatttgtggagagagctgaatggtcttgccatgaccaaaacgatacctttgtctgttgtcaaagctt |
323 |
Q |
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|||| ||| | |||| ||||| ||||| |||| ||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||| |
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| T |
37627997 |
gaagcaaggaaacacctaaggttgctaataggaaatttgtggagagagctcaatggtcttgccatgtcaaaaactatacctttgtctgttgtcaaagctt |
37628096 |
T |
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| Q |
324 |
ctcttaatatggcaagaactgctcaagttatttatcaacatggagatgatcaaagcacatttactgttgatgactatgtgcaaacattgat |
414 |
Q |
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| T |
37628097 |
ctctgaatatggctagaactgctcaagttatttatcaacatggagatgatcaaagcacatttactgttgatgactatgtgcaaacattgat |
37628187 |
T |
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