View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0499_low_2 (Length: 362)
Name: NF0499_low_2
Description: NF0499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0499_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 79 - 352
Target Start/End: Original strand, 27688576 - 27688849
Alignment:
| Q |
79 |
tttttaactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtactc |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27688576 |
tttttaactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtactc |
27688675 |
T |
|
| Q |
179 |
cagctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaacctct |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27688676 |
cagctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaacctct |
27688775 |
T |
|
| Q |
279 |
tataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccatcttctttctgtg |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27688776 |
tataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccatcttctgtctgtg |
27688849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 298
Target Start/End: Complemental strand, 18989693 - 18989473
Alignment:
| Q |
78 |
ttttttaactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtact |
177 |
Q |
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| T |
18989693 |
ttttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaatcataggtact |
18989594 |
T |
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| Q |
178 |
ccagctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaacctc |
277 |
Q |
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| T |
18989593 |
ccagcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaaatcaaaagttgaagaggccaacctc |
18989494 |
T |
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| Q |
278 |
ttataattagtccttttcctt |
298 |
Q |
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| T |
18989493 |
ttataattagtccttttcctt |
18989473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 19001962 - 19001907
Alignment:
| Q |
243 |
atgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttcctt |
298 |
Q |
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||||| |||||||| | ||| |||||||||||||||||||||||||| ||||||| |
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| T |
19001962 |
atgttgaagaatcaaaagttgaggagaccaacctcttataattagtccgtttcctt |
19001907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 75 - 347
Target Start/End: Complemental strand, 33383249 - 33382977
Alignment:
| Q |
75 |
ccattttttaactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggt |
174 |
Q |
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| T |
33383249 |
ccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggt |
33383150 |
T |
|
| Q |
175 |
actccagctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaac |
274 |
Q |
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|| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||| | ||| || ||||||| |
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| T |
33383149 |
accccagcaaccacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaac |
33383050 |
T |
|
| Q |
275 |
ctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccatcttcttt |
347 |
Q |
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|||||||||||||||| ||||||||| |||||| ||| |||||||| |||||||| || |||||||||||||| |
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| T |
33383049 |
ctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttcttt |
33382977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 75 - 307
Target Start/End: Original strand, 33390805 - 33391037
Alignment:
| Q |
75 |
ccattttttaactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggt |
174 |
Q |
| |
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|||| ||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||| | || | ||||||||||||||||||| |
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| T |
33390805 |
ccatgttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggt |
33390904 |
T |
|
| Q |
175 |
actccagctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaac |
274 |
Q |
| |
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|||||||| | || | ||| ||| | |||||||| ||||| ||||||| ||| || || |||| ||||| |||||||| | ||| |||||||||| |
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| T |
33390905 |
actccagcagctacactttccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaac |
33391004 |
T |
|
| Q |
275 |
ctcttataattagtccttttccttccgttcttt |
307 |
Q |
| |
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|||||||||||||||| ||||||| | |||||| |
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| T |
33391005 |
ctcttataattagtccctttcctttcattcttt |
33391037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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