View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0499_low_5 (Length: 319)
Name: NF0499_low_5
Description: NF0499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0499_low_5 |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 71 - 319
Target Start/End: Complemental strand, 19786070 - 19785822
Alignment:
| Q |
71 |
atcatcaacaattctcttccactgcaactcagcaacttctccaccatctccatcccccaaagactctataatctcgtgaggaagcaaagcaccagcagca |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19786070 |
atcatcaacaattctcttccactgcaactcagcaacttctccaccatctccatcccccaaagactctataatctggtgaggaagcaaagcaccagcagca |
19785971 |
T |
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| Q |
171 |
atagtagtcttccctgccttcacatcctccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaag |
270 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19785970 |
atagtagtctttcctgccttcacatccttcaagtacttctcaaacctctccttatcatgcttcaaaaacttttccttataaaacttcatcgccacagaag |
19785871 |
T |
|
| Q |
271 |
caaccctattgtaaggaatcaaaccccattgattagcaccactaaacac |
319 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19785870 |
caactctattgtaaggaatcaaaccccattgattagcaccaataaacac |
19785822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 71 - 319
Target Start/End: Original strand, 19795517 - 19795765
Alignment:
| Q |
71 |
atcatcaacaattctcttccactgcaactcagcaacttctccaccatctccatcccccaaagactctataatctcgtgaggaagcaaagcaccagcagca |
170 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19795517 |
atcatcaacaattctcttccactgcaactcagccacttctccaccatcttcatcatccaaagactctataatctcgtgaggaagcaaagcaccagcagca |
19795616 |
T |
|
| Q |
171 |
atagtagtcttccctgccttcacatcctccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaag |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19795617 |
atagtagtcttccctgccttcacatcctccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaag |
19795716 |
T |
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| Q |
271 |
caaccctattgtaaggaatcaaaccccattgattagcaccactaaacac |
319 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
19795717 |
caaccctattgtatggaatcaaaccccattgattagcaccaataaacac |
19795765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 319
Target Start/End: Original strand, 15834824 - 15835072
Alignment:
| Q |
71 |
atcatcaacaattctcttccactgcaactcagcaacttctccaccatctccatcccccaaagactctataatctcgtgaggaagcaaagcaccagcagca |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||| ||||| | ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
15834824 |
atcatcaacaattctcttccactgcaactcatccacttctccaccatatccattcaaaaaagactttataatcttatgaggaagcaaagcaccagcagcc |
15834923 |
T |
|
| Q |
171 |
atagtagtcttccctgccttcacatcctccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaag |
270 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
15834924 |
atagtagtcttccctgccttcacatcctgcaagtacttctcaaacctctcctcatcatgcttcaaaaacttctccttataaaactccatggccacagaag |
15835023 |
T |
|
| Q |
271 |
caaccctattgtaaggaatcaaaccccattgattagcaccactaaacac |
319 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| ||| ||||||| |
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| T |
15835024 |
caaccctattataaggaatcaaaccccattgattagccccaataaacac |
15835072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 319
Target Start/End: Original strand, 47712416 - 47712664
Alignment:
| Q |
71 |
atcatcaacaattctcttccactgcaactcagcaacttctccaccatctccatcccccaaagactctataatctcgtgaggaagcaaagcaccagcagca |
170 |
Q |
| |
|
|||||| || |||||| ||||||| ||||| || || ||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||| |
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| T |
47712416 |
atcatccaccattctcgtccactgtaactccgccacctctccaccatctccatcccccaacgaccgaataatatcatgaggaagcaaagcaccagcagcg |
47712515 |
T |
|
| Q |
171 |
atagtagtcttccctgccttcacatcctccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaag |
270 |
Q |
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|| ||||||||||| | |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| | |
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| T |
47712516 |
atcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacg |
47712615 |
T |
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| Q |
271 |
caaccctattgtaaggaatcaaaccccattgattagcaccactaaacac |
319 |
Q |
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||||||| |||||||||||||| |||| ||||||| ||| ||||||| |
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| T |
47712616 |
caaccctgttgtaaggaatcaatttccatcgattagccccaataaacac |
47712664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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