View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0499_low_7 (Length: 275)

Name: NF0499_low_7
Description: NF0499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0499_low_7
NF0499_low_7
[»] chr6 (6 HSPs)
chr6 (41-215)||(14970447-14970622)
chr6 (123-207)||(14979915-14979998)
chr6 (123-207)||(14989027-14989110)
chr6 (41-98)||(7682174-7682231)
chr6 (41-215)||(8403364-8403544)
chr6 (67-207)||(9191420-9191560)
[»] chr2 (3 HSPs)
chr2 (41-220)||(24786523-24786703)
chr2 (44-200)||(23656030-23656186)
chr2 (61-207)||(44586047-44586193)
[»] chr7 (6 HSPs)
chr7 (41-220)||(20026350-20026530)
chr7 (41-220)||(13477231-13477411)
chr7 (43-196)||(4531342-4531495)
chr7 (121-207)||(15866928-15867013)
chr7 (121-207)||(16060893-16060978)
chr7 (121-207)||(48377196-48377279)
[»] chr4 (5 HSPs)
chr4 (41-220)||(11097964-11098144)
chr4 (41-200)||(11556315-11556474)
chr4 (140-200)||(18231148-18231208)
chr4 (45-144)||(18220368-18220467)
chr4 (41-166)||(15872420-15872545)
[»] scaffold0737 (1 HSPs)
scaffold0737 (41-207)||(3237-3403)
[»] chr8 (2 HSPs)
chr8 (41-207)||(29294244-29294410)
chr8 (121-207)||(23658914-23658999)
[»] chr3 (13 HSPs)
chr3 (42-207)||(17791265-17791430)
chr3 (42-207)||(19099705-19099870)
chr3 (41-207)||(14481195-14481360)
chr3 (121-207)||(16642677-16642762)
chr3 (123-207)||(4712452-4712535)
chr3 (121-196)||(14062431-14062505)
chr3 (41-166)||(16359151-16359276)
chr3 (41-169)||(21975620-21975748)
chr3 (41-169)||(21998051-21998179)
chr3 (41-201)||(22924251-22924411)
chr3 (44-207)||(5943533-5943696)
chr3 (121-169)||(14054702-14054749)
chr3 (53-169)||(22160215-22160331)
[»] chr5 (3 HSPs)
chr5 (44-207)||(24831597-24831759)
chr5 (41-98)||(23960481-23960538)
chr5 (41-98)||(13937416-13937473)
[»] chr1 (3 HSPs)
chr1 (64-200)||(1566682-1566818)
chr1 (121-207)||(13881907-13881992)
chr1 (121-206)||(51626644-51626728)
[»] scaffold0319 (1 HSPs)
scaffold0319 (121-207)||(13220-13305)
[»] scaffold0003 (1 HSPs)
scaffold0003 (121-207)||(131162-131247)
[»] scaffold0091 (1 HSPs)
scaffold0091 (121-207)||(29438-29523)
[»] scaffold0218 (1 HSPs)
scaffold0218 (121-196)||(14768-14842)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 14970622 - 14970447
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14970622 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 14970523  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatg 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  14970522 cgaacatgagaacaaagtaataagatatacagtggttttattgagaagaataagtatgaaggagttaatgacgatg 14970447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 14979915 - 14979998
Alignment:
Q  123 acgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  14979915 acgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 14979998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 14989027 - 14989110
Alignment:
Q  123 acgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  14989027 acgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 14989110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 7682174 - 7682231
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattaga 98  Q
    |||||||||||||||||||||||||||||||| ||| | ||| ||||| |||||||||    
T  7682174 gaggaaagttgttgaagtcaaaattaatgataaggtaacatagtaactttaaattaga 7682231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 8403364 - 8403544
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||  ||||||||||| || |||||  |||||||||||||| ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |    
T  8403364 gaggaaagtttctgaagtcaaaagtactgataaagtgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacga 8403463  T
Q  141 cgaacatgagaaca----aagtaataagatatacaatggtttt-attgagaagaataagtatgaaggagtt-atgacgatg 215  Q
    ||||  ||||||||    || |||||||||||| | | ||||| | |||||||||||| || ||| ||||| |||||||||    
T  8403464 cgaatgtgagaacaagataattaataagatataaagtagttttaaatgagaagaataattacgaaagagttaatgacgatg 8403544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 9191560 - 9191420
Alignment:
Q  67 atgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataagat 166  Q
    |||||| |||||||| |||| | |||||||||   || ||||||  ||| |||||| ||||| ||| ||| | |||||  ||||||| | ||||||||||    
T  9191560 atgataaggtgagattataattttaaattagaatgaagttaagattaggagaatggtcgatgtatacatggcgacgaaagtgagaacgaggtaataagat 9191461  T
Q  167 atacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    ||| | |   |||| ||||| ||||||||||||| ||||||    
T  9191460 ataaagtaactttaatgagaggaataagtatgaaagagtta 9191420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 24786703 - 24786523
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||||||| | || ||||||  |||||||||| ||||||||| |||||||    
T  24786703 gaggaaacttgttgaagtcgaaattaatgataaggtgagataataactataaattagaacgaagttaagattaggggaatgggcgatgcataaatgacta 24786604  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatgatgag 220  Q
    ||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  24786603 cgaacatgagaacaaagtaataagagataaagttgttttattgagaagaataagtatgaaggagttaatgacgatggtgag 24786523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 23656030 - 23656186
Alignment:
Q  44 gaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacga 143  Q
    |||||||||||||||| | |||||| ||| ||||||||||| ||| |||||||||   || ||||||  |||||||||||| ||||||||| ||||| ||    
T  23656030 gaaagttgttgaagtcgagattaataataaggtgagataattactttaaattagaatgaagttaagattaggggaatggacaatgcatagacgactatga 23656129  T
Q  144 acatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaa 200  Q
    ||||  ||||||||||||||||||||  || ||||||||||| ||||||||||||||    
T  23656130 acatctgaacaaagtaataagatataatatagttttattgaggagaataagtatgaa 23656186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 44586047 - 44586193
Alignment:
Q  61 aaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaa 160  Q
    |||||||||||  ||||||||||||||| |||||||||   || ||||||  ||||||||||| |||| |||||||||||||||||| | |||||| |||    
T  44586047 aaattaatgatgaggtgagataataactttaaattagaatgaagttaagattaggggaatggatgatgaatagatgactacgaacatcacaacaaattaa 44586146  T
Q  161 taagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    ||||||||| ||| |||||||| |  |||||||||||||| ||||||    
T  44586147 taagatataaaatagttttatttaagagaataagtatgaaagagtta 44586193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 20026530 - 20026350
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   || ||||||  |||||||||||||||||||| |||| ||    
T  20026530 gaggaaagttgttgaagtcgaaattaatgatagggtgagataataactctaaattagaatgaagttaagattaggggaatggacgatgcatatatgaata 20026431  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatgatgag 220  Q
     ||| ||||||||||| |||||||||||| | |  |||||||||||||||| |||||||||||||| ||||||||| ||||    
T  20026430 tgaatatgagaacaaattaataagatataaattatttttattgagaagaatcagtatgaaggagttaatgacgatggtgag 20026350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 13477231 - 13477411
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||||| | ||| ||||| | || ||||||  |||||||||||| | |||| ||||||||    
T  13477231 gaggaaagttgctgaagtccaaattaatgataaggtgagataataagtttaatttagaacgaagttaagattaggggaatggacaacgcatggatgacta 13477330  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatgatgag 220  Q
    | ||||||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  13477331 caaacatgagaacaaagtaataagatataaagtcattttattgagaagaataagtatgaaggagttaatgacgatggtgag 13477411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 4531342 - 4531495
Alignment:
Q  43 ggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacg 142  Q
    |||||| |||||||||| || | ||||||| ||||||||||||||| ||||||||| | || ||||||  ||| |||||||| |||||||||||||||||    
T  4531342 ggaaagctgttgaagtcgaattcaatgataaggtgagataataactttaaattagaacgaagttaagattaggtgaatggacaatgcatagatgactacg 4531441  T
Q  143 aacatgagaacaaagtaataagatatacaatggttttattgagaagaataagta 196  Q
     || |||||| |||| |||||||||||  || |||||||||| |||||||||||    
T  4531442 cacgtgagaataaagcaataagatataagatcgttttattgaaaagaataagta 4531495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 15866928 - 15867013
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||| | | |||||||||||  ||||||||| ||| ||||||    
T  15866928 ggacgatgcatagatgacgacgaacgtgagaac-aagtaataagatataaagtcgttttattgaggtgaataagtaggaaagagtta 15867013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 16060978 - 16060893
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||| | ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  16060978 ggacgaagtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 16060893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 48377279 - 48377196
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    ||||| || ||||||||| ||||||  |||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  48377279 ggacggtgtatagatgacgacgaac--gagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 48377196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 11097964 - 11098144
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||||| ||||||||| | || ||||||  ||||||||||| |||||||| |||||||    
T  11097964 gaggaaagtttctgaagtcaaaattaatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggaagatgcataaatgacta 11098063  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatgatgag 220  Q
    | ||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||| || ||||||||| ||||    
T  11098064 caaacatgagaacaaagtaataagagataaagtcgttttattgagaagaataagtatgaaggaattaatgacgatggtgag 11098144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 11556474 - 11556315
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||   || ||||||  ||||||||||| |||| |||||||||||    
T  11556474 gaggaaagttgctgaagtcgaaattaatgatatggtgagataataactttaaattagaatgaagttaagattaggggaatggatgatgaatagatgacta 11556375  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaa 200  Q
    ||||||| | ||||||||||||||||| | ||| ||||||||||| ||||||| ||||||    
T  11556374 cgaacatcacaacaaagtaataagataaaaaatagttttattgaggagaataaatatgaa 11556315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 18231148 - 18231208
Alignment:
Q  140 acgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaa 200  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18231148 acgaacttgagaacaaagtaataagatataaaatagttttattgagaagaataagtatgaa 18231208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 18220368 - 18220467
Alignment:
Q  45 aaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaa 144  Q
    ||||||||||||||| |||||||||||| ||||||||||||||| || ||||||   || ||||||  ||||||||||| |||| ||||||| |||||||    
T  18220368 aaagttgttgaagtcgaaattaatgataaggtgagataataactttatattagaatgaagttaagattaggggaatggatgatgaatagatggctacgaa 18220467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 15872420 - 15872545
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||  |||  |||||| || ||||||  ||||||||||||| ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |    
T  15872420 gaggaaagtttctgatatcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacga 15872519  T
Q  141 cgaacatgagaacaaagtaataagat 166  Q
    ||||  ||||||||| ||||||||||    
T  15872520 cgaatgtgagaacaaggtaataagat 15872545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 3237 - 3403
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||| | || ||||||  ||||||||||||||||||||||||||||    
T  3237 gaggaaagttgttgaagtctaatttaatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggacgatgcatagatgacta 3336  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |  || | |||||||||||||||||||||  || ||||||||||| ||||| |||||||| ||||||    
T  3337 cacacgtaagaacaaagtaataagatataagatcgttttattgaggagaatgagtatgaaagagtta 3403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 207
Target Start/End: Complemental strand, 29294410 - 29294244
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||||||||| ||||||||  | || ||||||  |||||||||||||||||| |||||||||    
T  29294410 gaggaaagttgctgaagtcaaatttaattataaggtgagataataactttaaattaggacgaagttaagagtaggggaatggacgatgcacagatgacta 29294311  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    || || |||||||||||||| ||||||||  || ||||||||||| |||||||||||||| ||||||    
T  29294310 cgcacgtgagaacaaagtaacaagatataagatcgttttattgaggagaataagtatgaaagagtta 29294244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 23658999 - 23658914
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||| ||| ||||||||| |||||| ||||||||| ||||||||||||| ||| ||||||||||| |||||||||| ||| ||||||    
T  23658999 ggaccatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaaatcgttttattgagtagaataagtaggaaagagtta 23658914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 17791430 - 17791265
Alignment:
Q  42 aggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactac 141  Q
    |||||||||| ||||||| ||| |||||||| |||||||||| |||| ||||||||| |||| ||||||  |||| ||||||||||||||| ||||||||    
T  17791430 aggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatgcataaatgactac 17791331  T
Q  142 gaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||||||||||| |||||||||||  |  ||||||||||| || ||||||||||| ||||||    
T  17791330 gaacatgagaacaaagaaataagatataagacagttttattgaggaggataagtatgaaagagtta 17791265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 19099870 - 19099705
Alignment:
Q  42 aggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactac 141  Q
    |||||||||| ||||||| ||| |||||||| |||||||||| |||| ||||||||| |||| ||||||  |||| ||||||||||||||| ||||||||    
T  19099870 aggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatgcataaatgactac 19099771  T
Q  142 gaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||||||||||| |||||||||||  |  ||||||||||| || ||||||||||| ||||||    
T  19099770 gaacatgagaacaaagaaataagatataagacagttttattgaggaggataagtatgaaagagtta 19099705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 14481195 - 14481360
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||| |  | ||||||  |||| |||||||||||| ||||||||||    
T  14481195 gaggaaagttgttgaagtcaaaattaatgataaggtgagacagtaactttaaattagaacggagttaagattagggaaatggacgatgcctagatgacta 14481294  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||||||||||||||||||||||||  ||   ||||||||| || ||||||||||| ||||||    
T  14481295 cgaacatgagaacaaagtaataagatataagat-actttattgaggaggataagtatgaaagagtta 14481360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 16642762 - 16642677
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  16642762 ggacgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 16642677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 4712452 - 4712535
Alignment:
Q  123 acgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  4712452 acgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 4712535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 14062431 - 14062505
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagta 196  Q
    ||||||||||||| |||| |||||| ||||||| ||||||||||||||| | | |||||||||||  |||||||||    
T  14062431 ggacgatgcataggtgacgacgaacgtgagaac-aagtaataagatataaattcgttttattgaggtgaataagta 14062505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 16359151 - 16359276
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||  ||| ||||||| || ||||||  ||||||||||||| ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |    
T  16359151 gaggaaagtttctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacga 16359250  T
Q  141 cgaacatgagaacaaagtaataagat 166  Q
    ||||  ||||||||| ||||||||||    
T  16359251 cgaatgtgagaacaaggtaataagat 16359276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 21975748 - 21975620
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||  ||||||||| | || |||||  |||||||||||| | ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |    
T  21975748 gaggaaagtttctgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacga 21975649  T
Q  141 cgaacatgagaacaaagtaataagatata 169  Q
    ||||  ||||||||| |||||||||||||    
T  21975648 cgaatgtgagaacaaggtaataagatata 21975620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 21998179 - 21998051
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||  ||||||||| | || |||||  |||||||||||| | ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |    
T  21998179 gaggaaagtttctgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacga 21998080  T
Q  141 cgaacatgagaacaaagtaataagatata 169  Q
    ||||  ||||||||| |||||||||||||    
T  21998079 cgaatgtgagaacaaggtaataagatata 21998051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 22924411 - 22924251
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgacta 140  Q
    ||||||||||||||||||| ||| |||  ||| | ||||||||||||| |||| ||||   || |||||   |   |||||  ||||| ||| ||||| |    
T  22924411 gaggaaagttgttgaagtcgaaagtaactataagatgagataataactttaaaatagaatgaagttaagtttaatagaatgatcgatgtatatatgacga 22924312  T
Q  141 cgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaag 201  Q
    ||||  ||||||||||||||||||||||| | |   |||| || |||||||||||||||||    
T  22924311 cgaatgtgagaacaaagtaataagatataaagtcactttaatgggaagaataagtatgaag 22924251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 5943533 - 5943696
Alignment:
Q  44 gaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacga 143  Q
    ||||||| |||||||  ||  |||||||| |||| |||||||| |  |||||||| |||| ||||||  ||| |||||| | ||| ||||||||| | ||    
T  5943533 gaaagttattgaagttgaaggtaatgataaggtgtgataataatttcaaattagaacaaaattaagattaggagaatggtcaatgtatagatgacgagga 5943632  T
Q  144 acatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |  ||||||  |  |||||||||||| | | | |||| |||||||||||||| |||| ||||||    
T  5943633 atgtgagaatgagataataagatataaagtcgctttaatgagaagaataagtttgaaagagtta 5943696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 14054702 - 14054749
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatata 169  Q
    ||||||||||||| |||| |||||| ||||||| |||||||||||||||    
T  14054702 ggacgatgcataggtgacgacgaacgtgagaac-aagtaataagatata 14054749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 22160331 - 22160215
Alignment:
Q  53 tgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaa 152  Q
    ||||||||| | || |||||  |||||||||||| | ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |||||  ||||||    
T  22160331 tgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaa 22160232  T
Q  153 caaagtaataagatata 169  Q
    ||| |||||||||||||    
T  22160231 caaggtaataagatata 22160215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 24831597 - 24831759
Alignment:
Q  44 gaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacga 143  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |  | ||||||  |||| |||||| ||||| |||||||||||||    
T  24831597 gaaagttgttgaagtcaaaattaatgataaggtgagatagtaactttaaattagaacggagttaagattagggaaatggatgatgcctagatgactacga 24831696  T
Q  144 acatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    ||||||||||||||||||||||||||  || | ||||||||| || ||||||||||| ||||||    
T  24831697 acatgagaacaaagtaataagatataagatag-tttattgaggaggataagtatgaaagagtta 24831759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 23960481 - 23960538
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattaga 98  Q
    ||||||||||| ||| ||||||| ||||| || ||||||||||||||| |||||||||    
T  23960481 gaggaaagttgctgacgtcaaaagtaatggtaaggtgagataataactttaaattaga 23960538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 13937473 - 13937416
Alignment:
Q  41 gaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattaga 98  Q
    |||| ||||| | |||||| ||| |||||||| ||||||||||||||| |||||||||    
T  13937473 gagggaagttttcgaagtcgaaagtaatgataaggtgagataataactttaaattaga 13937416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 1566682 - 1566818
Alignment:
Q  64 ttaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataa 163  Q
    |||||| || |||| |||||||||| ||||||||| | || ||||||  || ||||||||||||||||||||||| |||  | ||||||||||||||||     
T  1566682 ttaatggtaaggtgggataataactttaaattagaacgaagttaagattagaggaatggacgatgcatagatgacgacgcgcgtgagaacaaagtaatag 1566781  T
Q  164 gatatacaatggttttattgagaagaataagtatgaa 200  Q
    |||||| ||| ||||||||||| ||||||||||||||    
T  1566782 gatataaaattgttttattgaggagaataagtatgaa 1566818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 13881907 - 13881992
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  13881907 ggacgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 13881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 51626644 - 51626728
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt 206  Q
    |||||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||| ||| |||||||||| ||| |||||    
T  51626644 ggacgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttatggaggagaataagtaggaaagagtt 51626728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 13220 - 13305
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  13220 ggacgatgtatagatgacgacgaacatgagaac-aagtactaagatataaagtcgttttattgaggagaataagtaagaaagagtta 13305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 131247 - 131162
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||| ||| ||||| |||||| ||||||||| ||||||||||||| | | |||||||||||||||||||||| ||| ||||||    
T  131247 ggacgatgtataaatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgagaagaataagtaggaaagagtta 131162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 29523 - 29438
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 207  Q
    |||||||| ||||||||| |||||| || |||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  29523 ggacgatgtatagatgacgacgaacgtgtgaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 29438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 14842 - 14768
Alignment:
Q  121 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagta 196  Q
    |||||||| ||||||||| |||||| |||||||||  |||||||||||| | | ||||||||||| ||||||||||    
T  14842 ggacgatgtatagatgacgacgaacgtgagaacaac-taataagatataaagtcgttttattgaggagaataagta 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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