View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0499_low_8 (Length: 268)
Name: NF0499_low_8
Description: NF0499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0499_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 79 - 268
Target Start/End: Complemental strand, 25794438 - 25794250
Alignment:
| Q |
79 |
ggagcagagagggagtgttggtccttattttgtaaattttttgtatcagctcttatattatagccaatcaaagagatttctgactcattgagaatttaca |
178 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25794438 |
ggagcaaaaagggagtgttggtccttattttgtaaattttt-gtatcagctcttatattatagccaatcaaagagatttctgactcattgagaatttaca |
25794340 |
T |
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| Q |
179 |
acagaatttacagataacctaccaagtatggaattttggactcaaacctaagttgtaatccgtatgagaggaaagtcttaccatgtgtgc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25794339 |
acagaatttacagataacctaccaagtatggaattttggactcaaacccaagttgtaatccgtatgagaggaaagtcttaccatgtgtgc |
25794250 |
T |
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