View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0499_low_9 (Length: 245)
Name: NF0499_low_9
Description: NF0499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0499_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 19796575 - 19796359
Alignment:
| Q |
24 |
gcttggtcacacaacccactcaccactctcaaactcgtctgtaacctccgtggtgttcgcggt----------ccgacaaagaaggcttctacgccgctg |
113 |
Q |
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| T |
19796575 |
gcttggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccg |
19796476 |
T |
|
| Q |
114 |
ctctatggtttcatgaaaatcaccctaaaaccctagctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccg |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||| |||||||||||||||||||| || || ||||| |
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| T |
19796475 |
ctctctggtttcatgaaaatcaccctaaaaccctagctaccaatgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccg |
19796376 |
T |
|
| Q |
214 |
tattctccaaggttctg |
230 |
Q |
| |
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| T |
19796375 |
tcttctcgaaggttctg |
19796359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 19785157 - 19785258
Alignment:
| Q |
144 |
ccctagctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaat |
243 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785157 |
ccctaactaccaatgttcctacacttgctgactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaat |
19785256 |
T |
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| Q |
244 |
cc |
245 |
Q |
| |
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|| |
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| T |
19785257 |
cc |
19785258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 15835810 - 15835600
Alignment:
| Q |
27 |
tggtcacacaacccactcaccactctcaaactcgtctgtaacctccgtggtgttcgcggt----------ccgacaaagaaggcttctacgccgctgctc |
116 |
Q |
| |
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||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||| ||||||| |
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| T |
15835810 |
tggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctc |
15835711 |
T |
|
| Q |
117 |
tatggtttcatgaaaatcaccctaaaaccctagctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtat |
216 |
Q |
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| ||||| |||||||||||||||||||||||||||||||||||| || || | ||| ||||||||||||||||||||||||||| || || |||||| | |
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| T |
15835710 |
tctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttggttacttcaaagatctccctgagatcctctaccgtct |
15835611 |
T |
|
| Q |
217 |
tctccaaggtt |
227 |
Q |
| |
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|||| |||||| |
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|
| T |
15835610 |
tctcgaaggtt |
15835600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 47713615 - 47713415
Alignment:
| Q |
36 |
aacccactcaccactctcaaactcgtctgtaacctccgtggtgttcgcggt-ccgacaaa---------gaaggcttctacgccgctgctctatggtttc |
125 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||| || ||||||||| ||| ||| ||||| ||||||||||||||||| ||||||| |
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| T |
47713615 |
aacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctctttggtttc |
47713516 |
T |
|
| Q |
126 |
atgaaaatcaccctaaaaccctagctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaagg |
225 |
Q |
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| | | |||||||||||||||||| | || || ||| | |||||| ||||||||||||||||||||||||| ||||| || |||||| |||| ||||| |
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| T |
47713515 |
accactaccaccctaaaaccctagcttctaacgtcccttcccttgctgactttggttacttcaaagatctcccagaaatcctttaccgtcttctgcaagg |
47713416 |
T |
|
| Q |
226 |
t |
226 |
Q |
| |
|
| |
|
|
| T |
47713415 |
t |
47713415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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