View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0500-INSERTION-10 (Length: 728)
Name: NF0500-INSERTION-10
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500-INSERTION-10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 32557494 - 32557798
Alignment:
| Q |
7 |
agattatactgcaagccagaaataattaaaatggtaacgcaatacccttggcaagatgatcaataacaaaacagaaaaggataaacccaatcttgaaaga |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557494 |
agataatactgcaagccagaaataattaaaatggtaacgcaatacccctggcaagatgatcaataacaaaacagaaaaggataaacccaatcttgaaaga |
32557593 |
T |
|
| Q |
107 |
gaactaatactatacccgaataaatactcattctccccccactgcattcaggattcccacatctctttcctactctctcactccttgcttgccacctatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557594 |
gaactaatactatacccgaataaatactcattctccccccactgcattcaggattcccacatctctttcctactctctcactccttgcttgccacctatt |
32557693 |
T |
|
| Q |
207 |
cccttctcctctcatacacccttaatcttggtttggacccaatttccagacaacccacatccttgtccccttttttacctatccttcagtacacatttct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557694 |
cccttctcctctcatacacccttaatcttggtttggacccaattcccagacaacccacatccttgtccccttttttacctatccttcagtacacatttct |
32557793 |
T |
|
| Q |
307 |
tatgg |
311 |
Q |
| |
|
||||| |
|
|
| T |
32557794 |
tatgg |
32557798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 348 - 621
Target Start/End: Original strand, 32557796 - 32558069
Alignment:
| Q |
348 |
tggatgggaagatgggattcaatacatacttgaaggttcttttcttgtccattatttcctttgcacttccctgtcacccaatttcctatcagtggacggt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557796 |
tggatgggaagatgggattcaatacatacttgaaggttcttttcttgtccattatttcctttgcacttccctgtcacccaatttcctatcagtggacggt |
32557895 |
T |
|
| Q |
448 |
gtgaatccatggaaaatagggcctggtccattacggcaagggcctcggaccaaaataggcttattttaatgatatcaatatcatgtaaagtacaaaacat |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557896 |
gtgaatccatggaaaatagggcctggtccattacggcaagggcctcggaccaaaataggcttattttaatgatatcaatatcatgtaaagtacaaaacat |
32557995 |
T |
|
| Q |
548 |
caataaggttaaaaatatatggctactgagaaaaaacgagaaaatttaaagtttcagattaagtttcagattaa |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557996 |
caataaggttaaaaatatatggctactgagaaaaaacgagaaaatttaaagtttcagattaagtttcagattaa |
32558069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 628 - 721
Target Start/End: Original strand, 32558051 - 32558144
Alignment:
| Q |
628 |
agattaagtttcagatcaattcgaagacaaaaataggatttcagatgtttagaaaaccttggacgctaagtcatcaactttttgttgaagattc |
721 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32558051 |
agattaagtttcagattaattcgaagacaaaaataggatttcagatgtttagaaaaccttggacgccaagtcatcaactttttgttgaagattc |
32558144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1550 times since January 2019
Visitors: 3457