View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500-INSERTION-11 (Length: 317)
Name: NF0500-INSERTION-11
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500-INSERTION-11 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 1547984 - 1548292
Alignment:
| Q |
7 |
accatcaactactttttctttgaaatttgtttgtttccttgcttattctaattctctgcttctgatcacaggttgtgatggttggtcttgacaatgctgg |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1547984 |
accatcaactactttttctttgaaatatgtttgtttccttgcttattctaattctctgcttctgatcacaggttgtgatggttggtcttgacaatgctgg |
1548083 |
T |
|
| Q |
107 |
caaaacaactatactctataagcttcaaattggaaaagttgtatctactattcctacaattggtgtgtctaataatcttcataattgactttccagttta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1548084 |
caaaacaactatactctataagcttcaaattggaaaagttgtatctactattcctacaattggtgtgtctaataatcttcataattgactttccagttta |
1548183 |
T |
|
| Q |
207 |
aaaactttctttagattgatcatgattcatcttgcgttgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctgtggtgtgat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1548184 |
aaaactttctttagattgatcatgattcatcttgcgttgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctgtggtgtgat |
1548283 |
T |
|
| Q |
307 |
attttcttc |
315 |
Q |
| |
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|| |||||| |
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| T |
1548284 |
atattcttc |
1548292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 1544123 - 1544439
Alignment:
| Q |
7 |
accatcaactactttttctttgaaatttgtttgtttccttgcttattctaattctctgcttctgatcacaggttgtgatggttggtcttgacaatgctgg |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1544123 |
accatcaactactttttctttgaaatatgtttgtttccttgcttattctaattctctgcttctgatcacaggttgtgatggttggtcttgacaatgctgg |
1544222 |
T |
|
| Q |
107 |
caaaacaactatactctataagcttcaaattggaaaagttgtatctactattcctacaattggtgtgtctaataatcttcat-aattgactttcca---- |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
1544223 |
caaaacaactatactctataagcttcaaattggaaaagttgtatctactattcctactgttggtgtgtctaataatcttcataaattgactttccaattt |
1544322 |
T |
|
| Q |
202 |
----gtttaaaaactttctttagattgatcatgattcatcttgcgttgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctg |
297 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1544323 |
tattgtttaaaaactttctttggattgat-atgattcatcttgcattgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttaggtctg |
1544421 |
T |
|
| Q |
298 |
tggtgtgatattttcttc |
315 |
Q |
| |
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|| |||||||| |||||| |
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| T |
1544422 |
tgatgtgatatattcttc |
1544439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 1540287 - 1540383
Alignment:
| Q |
74 |
acaggttgtgatggttggtcttgacaatgctggcaaaacaactatactctataagcttcaaattggaaaagttgtatctactattcctacaattggt |
170 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||| ||||| ||||| || ||||| ||||| ||||| |||||||| |||| || |||||| |
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| T |
1540287 |
acaggttgtgatgcttggtcttgatgctgctggcaaaactactattctctacaaacttcacattggtgaagttttatctactgttcccactattggt |
1540383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 416035 - 415972
Alignment:
| Q |
108 |
aaaacaactatactctataagcttcaaattggaaaagttgtatctactattcctacaattggtg |
171 |
Q |
| |
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|||||||||||| | || ||||| || |||||| ||||| |||||||| ||||||||||||||| |
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| T |
416035 |
aaaacaactatattgtacaagctccacattggagaagttatatctactgttcctacaattggtg |
415972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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