View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500-INSERTION-14 (Length: 539)
Name: NF0500-INSERTION-14
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500-INSERTION-14 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 359 - 532
Target Start/End: Original strand, 3184472 - 3184645
Alignment:
| Q |
359 |
tacaattgagacaatatcagtcacatttgaccataattttctatggtaaaaatatctgcgagttgactgtaatttaaaatcttgataacacgactaacat |
458 |
Q |
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| T |
3184472 |
tacaattgagacaatttcagtcgcatttgaccaaaattttctatggtaaaaatatctgcaagttgactataatttaaaatcttgataacacgactaacat |
3184571 |
T |
|
| Q |
459 |
atattacctttctcgcacttttcggggtgcatattccacgattttaaagcaataacacaagccaatgtgttaat |
532 |
Q |
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| T |
3184572 |
atattacctttctcgcacttttcggggtgcatattccacgatcttaaagcaataacacaagccaatgtgttaat |
3184645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 527
Target Start/End: Complemental strand, 3225146 - 3225077
Alignment:
| Q |
458 |
tatattacctttctcgcacttttcggggtgcatattccacgattttaaagcaataacacaagccaatgtg |
527 |
Q |
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|||||||||||| || |||||||| |||||||||||||| | | |||| |||||||||||||||| |||| |
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| T |
3225146 |
tatattacctttgtcacacttttcagggtgcatattccatgttgttaatgcaataacacaagccagtgtg |
3225077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 3184641 - 3184671
Alignment:
| Q |
19 |
ttaatgattcgatcatgagcagaaaacaatt |
49 |
Q |
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| T |
3184641 |
ttaatgattcgatcatgagcagaaaacaatt |
3184671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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