View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500-INSERTION-19 (Length: 563)
Name: NF0500-INSERTION-19
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500-INSERTION-19 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 43666222 - 43665667
Alignment:
| Q |
1 |
aacaacactctaactaaaccttctcttcatgttgaatctccaccacttgaaccaagtcctctccgtaagatcatagtcgttgcttccatagcagcaggtg |
100 |
Q |
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| T |
43666222 |
aacaacactctaactaaaccttctcttcatgttgaatctccaccacttgaacctagtcctctccgtaagatcatagtcgttgcttccatagcagcaggtg |
43666123 |
T |
|
| Q |
101 |
ttcagtttggctgggccctacagctttcacttttaactccctatgttcagttactcggtatcccccatacttgggccgcgtacatatggctctgcggccc |
200 |
Q |
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| T |
43666122 |
ttcagtttggctgggccctacagctttcacttttaactccctatgttcagttactcggtatcccccatacttgggccgcatacatctggctctgcggccc |
43666023 |
T |
|
| Q |
201 |
aatctcggggatgcttgtccaacctattgtcggttatcacagcgatcgttgcacttcacgcttcggtcgccgtcgtcctttcatcgctgccggatcattc |
300 |
Q |
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| T |
43666022 |
aatctcggggatgcttgtccaaccgattgtcggttatcacagtgatcgttgcacttcacgcttcggtcgccgtcgtccgttcatcgctgcaggatcattc |
43665923 |
T |
|
| Q |
301 |
gctgtcgctatcgccgttttccttatcggctatgctgctgaccttggtcacagcttcggcgatgacttatcnnnnnnngtccgtccacgtgcaataggaa |
400 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43665922 |
gccgtcgctattgccgttttccttatcggctatgctgctgaccttggtcacagcttcggcgatgacttatcaaaaaaagtccgtccacgtgcaataggaa |
43665823 |
T |
|
| Q |
401 |
tcttcgtcgttggttcctggatcctcgacgtcgctaacaacatgcttcaaggtccttgccgtgcacttcttggtgacctctgcgccggtaaccaccaaaa |
500 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43665822 |
tcttcgtcgttggtttctggatcctcgacgtcgctaacaacatgcttcaaggtccttgccgtgcacttcttggtgacctctgcgccggtaaccaccaaaa |
43665723 |
T |
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| Q |
501 |
aacaagaaacgcaaacgcgtttttctcgttttttatggccgtcggtaacatcctcg |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43665722 |
aacaagaaacgcaaacgcgtttttctcgttttttatggccgtcggtaacatcctcg |
43665667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 10932049 - 10932099
Alignment:
| Q |
301 |
gctgtcgctatcgccgttttccttatcggctatgctgctgaccttggtcac |
351 |
Q |
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||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
10932049 |
gctgtggctattgccgtcttccttatcggttatgcggctgaccttggtcac |
10932099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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