View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500-INSERTION-20 (Length: 581)
Name: NF0500-INSERTION-20
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500-INSERTION-20 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 44 - 292
Target Start/End: Original strand, 28998421 - 28998669
Alignment:
| Q |
44 |
gtccatctatttaaaatatgtatatatatgaaattgtgatctcctatttcaaaaaatcatattttcgcaccctatttgactttnnnnnnnnnnnnnnnnt |
143 |
Q |
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| T |
28998421 |
gtccatctatttaaaatatgtatatatatgaaattgtgatctcctatttcaaaaaatcatattttcgcaccctatttgactttaaaaaaaaataaaaaat |
28998520 |
T |
|
| Q |
144 |
tgttatgacttatttttggatcatttttcttataacgtagtccgttcttttatgacttgggagatcttattaaacatatttttgttgacatagatattca |
243 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28998521 |
tgttatgacttatttttggatcatttttcttataatgtagtccgttcttttatgacttgggagatcttattaaacatatttttgttgacatagatattca |
28998620 |
T |
|
| Q |
244 |
ctgtagtctgataagtgttgtcattttataagtgaatatgtcacgtcat |
292 |
Q |
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| T |
28998621 |
ctgtaatctgataagtgttgtcattttataagtgaatatgtcacgtcat |
28998669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 404 - 581
Target Start/End: Original strand, 28998782 - 28998959
Alignment:
| Q |
404 |
aattatttgatgaaaaccatttaaatcaaacaaatatttgatgaaaaccttactccaagctatctctagaccatgatagatcccccataactttgcttct |
503 |
Q |
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| T |
28998782 |
aattatttgatgaaaaccatttaaatcaaacaaatatttgatgaaaaccttactccaagctatctctagaccatgatagatcccccataactttgcttct |
28998881 |
T |
|
| Q |
504 |
accattgagcacgttcttaaactcgaagcaaaactataaatacacccaattagcatgttactcaaaatagtcacaaag |
581 |
Q |
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| T |
28998882 |
accattgagcacgttcttaaactcgaagcaaaactataaatacacccaattagcatgttactcaaaatagtcacaaag |
28998959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 40444686 - 40444640
Alignment:
| Q |
212 |
attaaacatatttttgttgacatagatattcactgtagtctgataag |
258 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
40444686 |
attatacatatttttgttgacatagatattcaatgtagtctaataag |
40444640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 6948866 - 6948802
Alignment:
| Q |
217 |
acatatttttgttgacatagatattcactgtagtctgataagtgttgtcattttataagtgaata |
281 |
Q |
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| T |
6948866 |
acatatttttgctgacatagatattcagtatggtctaataagcgttgtcatatcataaatgaata |
6948802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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