View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500-INSERTION-26 (Length: 677)
Name: NF0500-INSERTION-26
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500-INSERTION-26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 10 - 677
Target Start/End: Complemental strand, 39560410 - 39559743
Alignment:
| Q |
10 |
tatacttatatgacttgtattcgaatgcaacatagaccaaggcataaccaacggttatataatgagtttagactaggatcttacaaattgctgagtaaat |
109 |
Q |
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| T |
39560410 |
tatacttatatgacttgtattcgaatgcaacatagaccaaggcataaccaacggttatataatgagtttagactaggatcttacaaattgctgagtaaat |
39560311 |
T |
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| Q |
110 |
atatataacagaaaataacattaaagagtggcatgccaacacttttacccatccaatatagaaagccaaattaacctccattagagagcctcttgtaaag |
209 |
Q |
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| T |
39560310 |
atatataacagaaaata-cattaaagagtggcatgccaacacttttacccatccaatatagaaagccaaattaacctccattagagtgcctcttgtaaag |
39560212 |
T |
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| Q |
210 |
aaagaactccaatttgattatacatgttacattaattatcctgcaaaaggagatatgatcatggcgacattagttgtttgttaggcatttcaatataccc |
309 |
Q |
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| T |
39560211 |
aaagaactccaatttgattatacatgttacattaattatcctgcaaaaggagatatgatcatggcgacattagttgtttgttaggcatttcaatataccc |
39560112 |
T |
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| Q |
310 |
actccattaactcctcactctccaacataaattgagctaatgtgcataatactctaaacatgtaataagatattgaagatttcttctccccaacgtattt |
409 |
Q |
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| T |
39560111 |
actccattaactcctcactctccaacataaattgagctaatgtgcataatactctaaacatgtaataagatattgaagatttcttctccccaacgtattt |
39560012 |
T |
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| Q |
410 |
tataaaacacgcgatttgtttggattacacttttcaagcttgcaagaaaacaaacgttttttacacatttgaattatgtaatccagagagatcgtgtgtt |
509 |
Q |
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| T |
39560011 |
tataaaacacgcgatttgtttggattacacttttcaagcttgcaagaaaacaaactttttttacacatttgaattatgtaatccagagagatcgtgtgtt |
39559912 |
T |
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| Q |
510 |
tttagaaaagcatgtgcgtggggaagaaattatcttcttgagttcaagtcaagaatgaaataagagagatggcgaaaaaattaaccggccggaggaaaat |
609 |
Q |
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| T |
39559911 |
tttagaaaagcgtgtgcgtggggaagaaattatcttcttgagttcaagtcaagaatgaaataagagagatggcgaaaaaactaaccggccagaggaaaat |
39559812 |
T |
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| Q |
610 |
cctacattt-nnnnnnnntatatcgttttttgcttcgacaaaccactttaagaactctaatggatatcc |
677 |
Q |
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| T |
39559811 |
cctacatttaaaaaaaaatatcttgctttttgcttcgacaaaccactttaagaactctaatggatatcc |
39559743 |
T |
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