View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0500-INSERTION-29 (Length: 693)

Name: NF0500-INSERTION-29
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0500-INSERTION-29
NF0500-INSERTION-29
[»] chr5 (5 HSPs)
chr5 (404-674)||(1953081-1953354)
chr5 (183-359)||(1953358-1953530)
chr5 (5-75)||(1953635-1953703)
chr5 (105-139)||(1953573-1953607)
chr5 (186-244)||(27308229-27308287)
[»] chr3 (4 HSPs)
chr3 (183-244)||(43189558-43189619)
chr3 (183-232)||(35850803-35850852)
chr3 (183-244)||(44991098-44991159)
chr3 (184-244)||(34333789-34333849)
[»] chr1 (4 HSPs)
chr1 (183-244)||(49564403-49564463)
chr1 (183-244)||(12115086-12115147)
chr1 (206-243)||(43807256-43807293)
chr1 (184-228)||(33128275-33128319)
[»] chr7 (4 HSPs)
chr7 (183-242)||(8900216-8900275)
chr7 (183-244)||(8114787-8114848)
chr7 (184-228)||(10360554-10360597)
chr7 (184-232)||(30060556-30060604)
[»] chr8 (4 HSPs)
chr8 (194-244)||(9815106-9815156)
chr8 (183-244)||(13795737-13795798)
chr8 (183-232)||(34873518-34873567)
chr8 (184-225)||(15238042-15238083)
[»] chr2 (2 HSPs)
chr2 (184-223)||(41385711-41385750)
chr2 (183-224)||(8236834-8236875)
[»] chr4 (1 HSPs)
chr4 (207-244)||(23211207-23211244)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 404 - 674
Target Start/End: Complemental strand, 1953354 - 1953081
Alignment:
Q  404 tcaaatatcacggttcactttcactcctccaccaagttggattggagctttgataccaattgtttaggagttcgaatgagtgtcgagagcaacaacgaat 503  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  1953354 tcaaatatcatggttcactttcactcctccaccaagttggattggagctttgataccaattgtttaggagttcgaatgagcatcgagaacaacaacgaat 1953255  T
Q  504 caatgatatataatcataagagaaagtgacatcacatctccatccaaaaaatttaattaatcaaaacattagagatatcaattac----attgtatatcc 599  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     || ||| |||    
T  1953254 caatgatatataatcataagagagagtgacatcacatctccatccaaaaaatttaattaatcaaaacattagagatatcagttacctttcttatatctcc 1953155  T
Q  600 gacattttattcatcaataataaatgtgtgactaacccactaacactaataaatgtgtgactggccactaacacc 674  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  1953154 gacattttattcatcaataataaatgtgtgactaa-ccactagcactaataaatgtgtgactagccactaacacc 1953081  T

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Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 183 - 359
Target Start/End: Complemental strand, 1953530 - 1953358
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcatnnnnnnnnnnnnnttcatcaaactcataaagaaactct 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  1953530 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcataaaaaaaaa----ttcatcaaactcataaagaaactct 1953435  T
Q  283 wtgatttgatttcttatatattcaactttttatccattaataaacaatatgacactaaacactcacacttgaacccc 359  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1953434 ttgatttgatttcttatatattcaactttttatccattaataaacaatatgagactaaacactcacacttgaacccc 1953358  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 1953703 - 1953635
Alignment:
Q  5 acagatcagagaacaaaacgagggagtggttgcagaatcaaaaaattacggtaacactttcatcctttatc 75  Q
    |||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||||||||||||    
T  1953703 acagatcagagaacaaaacgaggg-gtggttgcagaatc-aaaagttgcggtaacactttcatcctttatc 1953635  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 1953607 - 1953573
Alignment:
Q  105 atgttataaagtgtcaacattattacctttttaat 139  Q
    |||||||||||||||||||||||||||||||||||    
T  1953607 atgttataaagtgtcaacattattacctttttaat 1953573  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 27308229 - 27308287
Alignment:
Q  186 atcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    ||||| || ||||||||| ||||||||  ||||||||||||||||||| || |||||||    
T  27308229 atcaaactcataaacaaacccaaatctatatcatacaaacatagaaatacatatttcat 27308287  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 43189619 - 43189558
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    |||||||| || ||||||  ||||||||||||||| |||||||||||||| |||||||||||    
T  43189619 ttcatcaaactcataaacgcatccaaatcttcatcctacaaacatagaaacccaaatttcat 43189558  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 35850803 - 35850852
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaa 232  Q
    |||||||| || |||||||||| |||||||||||||||||||| ||||||    
T  35850803 ttcatcaaactcataaacaaattcaaatcttcatcatacaaacctagaaa 35850852  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 44991159 - 44991098
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    |||||||| || |||||||||  | |||||||||||||||||||||||||  ||||||||||    
T  44991159 ttcatcaaactcataaacaaactcgaatcttcatcatacaaacatagaaactcaaatttcat 44991098  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 34333849 - 34333789
Alignment:
Q  184 tcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    ||||||| || |||||||||  ||| |||||||||||||||| || ||||||| |||||||    
T  34333849 tcatcaaactcataaacaaactcaactcttcatcatacaaacctataaatccagatttcat 34333789  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 49564403 - 49564463
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    |||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  49564403 ttcatcaaactcataaa-aaacccaaatcttcatcatacaaacatagaaacccaaatttcat 49564463  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 12115147 - 12115086
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    ||||||||||| ||| |||||| |||||||||||||||| | | ||||||  ||||||||||    
T  12115147 ttcatcaagctcatagacaaatgcaaatcttcatcatactagcctagaaaatcaaatttcat 12115086  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 43807293 - 43807256
Alignment:
Q  206 caaatcttcatcatacaaacatagaaatccaaatttca 243  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  43807293 caaatattcatcatgcaaacatagaaatccaaatttca 43807256  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 33128275 - 33128319
Alignment:
Q  184 tcatcaagcttataaacaaatccaaatcttcatcatacaaacata 228  Q
    ||||||| || ||||||||||  ||||||||||||||||||||||    
T  33128275 tcatcaaactcataaacaaatttaaatcttcatcatacaaacata 33128319  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 8900275 - 8900216
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttc 242  Q
    |||||||| || |||||||||  ||||| ||||||||||||||||||||| |||||||||    
T  8900275 ttcatcaaactcataaacaaactcaaattttcatcatacaaacatagaaacccaaatttc 8900216  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 8114787 - 8114848
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    |||||||| || ||||||||| ||||||||||||| |||||| ||| ||| || ||||||||    
T  8114787 ttcatcaaactcataaacaaacccaaatcttcatcttacaaaaataaaaacccgaatttcat 8114848  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 10360597 - 10360554
Alignment:
Q  184 tcatcaagcttataaacaaatccaaatcttcatcatacaaacata 228  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||    
T  10360597 tcatcaaactcataaacaaa-ccaaatcttcatcatacaaacata 10360554  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 30060556 - 30060604
Alignment:
Q  184 tcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaa 232  Q
    ||||||| || |||| |||| |||||||||||||||||||||| |||||    
T  30060556 tcatcaaactcataagcaaacccaaatcttcatcatacaaacaaagaaa 30060604  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 9815106 - 9815156
Alignment:
Q  194 tataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    |||||||||| | ||||||||||||||||||||||||||| ||| ||||||    
T  9815106 tataaacaaaccaaaatcttcatcatacaaacatagaaattcaattttcat 9815156  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 13795737 - 13795798
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    |||||||| ||  |||||||| ||||||||||||||||| |||||||||| |||| ||||||    
T  13795737 ttcatcaaactcgtaaacaaacccaaatcttcatcatactaacatagaaacccaattttcat 13795798  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 34873518 - 34873567
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaacatagaaa 232  Q
    |||||||| || ||||||||| | ||||||||||||||||||||||||||    
T  34873518 ttcatcaaactcataaacaaacctaaatcttcatcatacaaacatagaaa 34873567  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 15238083 - 15238042
Alignment:
Q  184 tcatcaagcttataaacaaatccaaatcttcatcatacaaac 225  Q
    ||||||| || |||||||||||||||||||||||||| ||||    
T  15238083 tcatcaaactcataaacaaatccaaatcttcatcataaaaac 15238042  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 41385711 - 41385750
Alignment:
Q  184 tcatcaagcttataaacaaatccaaatcttcatcatacaa 223  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  41385711 tcatcaaactcataaacaaatccaaatcttcatcatacaa 41385750  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 8236834 - 8236875
Alignment:
Q  183 ttcatcaagcttataaacaaatccaaatcttcatcatacaaa 224  Q
    |||||||| || ||||||||| ||||||||||||||||||||    
T  8236834 ttcatcaaactcataaacaaacccaaatcttcatcatacaaa 8236875  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 23211207 - 23211244
Alignment:
Q  207 aaatcttcatcatacaaacatagaaatccaaatttcat 244  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  23211207 aaatcttcattatacaaacatagaaattcaaatttcat 23211244  T

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