View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0500-INSERTION-32 (Length: 367)

Name: NF0500-INSERTION-32
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0500-INSERTION-32
NF0500-INSERTION-32
[»] chr6 (1 HSPs)
chr6 (1-367)||(3854408-3854774)


Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 3854774 - 3854408
Alignment:
Q  1 cctctacccatttcccttaaaatgaaattctatgtctaacactctttaagtcaaaagataaactttggattgtaagtcgggaaagtattatgttcaggaa 100  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  3854774 cctctacccatttcccttataatgaaattatatgtctaacactccttaagtcaaaagataaattttgaattgtaagtcgggaaagtattatgttcaggaa 3854675  T
Q  101 ttgaaacacatgtaaagattcctctgttagctcccacgcacctacacatgcaaagatcaaacacgaatgtgaagtggcaaaggccaaaattaggttttgt 200  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3854674 ttgaaacacatgcaaagattcctctattagctcccacgcacctacacatgcaaagatcaaacacgaatgtgaagtggcaaaggccaaaattaggttttgt 3854575  T
Q  201 taaaatcagtacaaatgtaaatttatctgaggtgggtatttggggattaggtgttgttgctcgtgatgacaatggtgaagagttgggatcttctacttgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3854574 taaaatcagtacaaatgtaaatttatctgaggtgggtatttggggattaggtgttgttgctcgtgatgacaatggtgaagagttgggatcttctacttgg 3854475  T
Q  301 tgtgtcgaaggttttgaagaccgagccactgcggaagctttcctcatgtttaaagctttgtgttggg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3854474 tgtgtcgaaggttttgaagaccgagccactgcggaagctttcctcatgtttaaagctttgtgttggg 3854408  T

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