View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500-INSERTION-36 (Length: 196)
Name: NF0500-INSERTION-36
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500-INSERTION-36 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 15817335 - 15817470
Alignment:
| Q |
22 |
atcatgcttaaagtcatgtaacacttatccttcagactcatattctcttcacacaatctcaccaaagttctctcaagtgtataacggttaagcaaatcac |
121 |
Q |
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| T |
15817335 |
atcatgcttaaagtcatgtaacacttatccttcagactcat--tctcttcacacaatctcaccaaagttctctcaagtgtttaacggttaagcaaatcac |
15817432 |
T |
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| Q |
122 |
tcaaagcgtagatcatgcatcccactaccgtaggcttg |
159 |
Q |
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| T |
15817433 |
tcaaagcgtagatcatgcatcccactaccgtaggcttg |
15817470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 15833460 - 15833516
Alignment:
| Q |
103 |
taacggttaagcaaatcactcaaagcgtagatcatgcatcccactaccgtaggcttg |
159 |
Q |
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| T |
15833460 |
taacggttaagcaaatcactcaaagcgtagatcatgcatcccactaccgtaggcttg |
15833516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 15825784 - 15825863
Alignment:
| Q |
64 |
ttctcttcacacaatctcaccaaagttctctcaagtgtataacggttaagcaaatcactcaaagcgtagatcatgcatcc |
143 |
Q |
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| T |
15825784 |
ttctcttcacttagtctcaccaaagttctctcaagtgttcaattgttaagcaattcactcaaattctaggtcatgcatcc |
15825863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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