View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500-INSERTION-8 (Length: 236)
Name: NF0500-INSERTION-8
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500-INSERTION-8 |
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Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 6928804 - 6928872
Alignment:
| Q |
40 |
gaattctatggatacttgtacctattttgattcttgtattgggaatcacaataagtgtactagcaattg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6928804 |
gaattctatggatacttgtacctattttgattcttgtattgggaatcacaataagtgtactagcaattg |
6928872 |
T |
|
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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 14541369 - 14541437
Alignment:
| Q |
40 |
gaattctatggatacttgtacctattttgattcttgtattgggaatcacaataagtgtactagcaattg |
108 |
Q |
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| T |
14541369 |
gaattctatggatacttgtacctattttgattcttgtattgggaatcacaataagtgtactagcaattg |
14541437 |
T |
|
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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 504872 - 504940
Alignment:
| Q |
40 |
gaattctatggatacttgtacctattttgattcttgtattgggaatcacaataagtgtactagcaattg |
108 |
Q |
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| T |
504872 |
gaattctatggatacttgtacctattttgattcttgtattgggaatcacaataagtgtactagcaattg |
504940 |
T |
|
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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 53092033 - 53091965
Alignment:
| Q |
40 |
gaattctatggatacttgtacctattttgattcttgtattgggaatcacaataagtgtactagcaattg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53092033 |
gaattctatggatacttgtacctattttgattcttgtattgggaatcacaataagtgtactagcaattg |
53091965 |
T |
|
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 53091960 - 53091925
Alignment:
| Q |
73 |
ttgtattgggaatcacaataagtgtactagcaattg |
108 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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|
| T |
53091960 |
ttgtattgggaatcacaataattgtactagcaattg |
53091925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 32790221 - 32790140
Alignment:
| Q |
120 |
tataaagaatcaactttcacgtcgaaattaatgtcaaatgtagatttaagtttaaattatacatatggaaatatgaaaacttga |
203 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||| ||||| |||||||||| |
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| T |
32790221 |
tataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggtttaaatttaaactat--atatgaaaataagaaaacttga |
32790140 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 32311206 - 32311307
Alignment:
| Q |
120 |
tataaagaatcaactttcacgtcgaaattaatgtcaaatgtagatttaagtttaaattatacatatggaaatatgaaaacttgaattaagtgatcaatat |
219 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||| ||| | |||||| ||| ||||| ||||| |||||||||| |||| |||||||| |
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|
| T |
32311206 |
tataaggaatcaactttcatgtcgaaattaatgtcaaatgtaggttttaatttaaactat--atatgaaaataagaaaacttgacacaagtaatcaatat |
32311303 |
T |
|
| Q |
220 |
aata |
223 |
Q |
| |
|
|||| |
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|
| T |
32311304 |
aata |
32311307 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 32812353 - 32812278
Alignment:
| Q |
126 |
gaatcaactttcacgtcgaaattaatgtcaaatgtagatttaagtttaaattatacatatggaaatatgaaaacttga |
203 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||||||||||| |||||||||| ||||| ||||| |||||||||| |
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|
| T |
32812353 |
gaatcaactttcaccttgaaattaatatcaaatgtagatttaaatttaaattat--atatgaaaataagaaaacttga |
32812278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 28213562 - 28213508
Alignment:
| Q |
126 |
gaatcaactttcacgtcgaaattaatgtcaaatgtagatttaagtttaaattata |
180 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| || |||||| |||| |
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|
| T |
28213562 |
gaatcaactttcacgtcaaaattaatgtcaaatgtagattcaaatttaaactata |
28213508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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