View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_high_1 (Length: 645)
Name: NF0500_high_1
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 10 - 616
Target Start/End: Complemental strand, 3425676 - 3425070
Alignment:
| Q |
10 |
aaaagaactcgagcagaaatagaaaggatggacagtgcaaacttttgcacagaaatagagcaaggatggagaacaatgatgacataaccaggctctcata |
109 |
Q |
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| T |
3425676 |
aaaagaactcgagcagaaatagaaaggatggacagtgcaaacttttgcacagaaatagagcaaggatggagaacaatgatgacataaccaggctctcata |
3425577 |
T |
|
| Q |
110 |
agtcataccatatttgtcttatagggcacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgacagttaattatggataac |
209 |
Q |
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| T |
3425576 |
agtcataccatatttgtcttataggacacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgacagttaattatggataac |
3425477 |
T |
|
| Q |
210 |
taacaagataacttgctacacaagttatctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatgacagaactcaaactcaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425476 |
taacaagataacttgctacacaagttatctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatgacagaactcaaactcaaa |
3425377 |
T |
|
| Q |
310 |
gatacggtaacaggatttttgagaatttttccctaaaattgcaatagcagacatcaaatcacaacggtaccgggatagcaccagcgccgcaatggcgctg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425376 |
gatacggtaacaggatttttgagaatttttccctaaaattgcaatagcagatatcaaatcacaacggtaccgggatagcaccagcgccgcaatggcgctg |
3425277 |
T |
|
| Q |
410 |
ctttttaaccactaatataggccgctagtgatgatactctcaatggcgcttttcgggcctatggtgcggaagtggagggcagcgccgccaaactacaccg |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3425276 |
ctttttaaccactaatataggccgctagtgatgatactctcaatggcgcttttcgggcctatggtgcggaagtggagggcagcgctgccaaactacaccg |
3425177 |
T |
|
| Q |
510 |
ctatagcgtgctattgacaacatagctgaaataaaaattcctgaaattttcaaattgattgcggattaaacaatccctttggctcttaaacgttgtggtg |
609 |
Q |
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| T |
3425176 |
ctatagcgtgctattggcaacatagctgaaataaaaattcctgaaattttcaaattgattgcggattaaacaatccctttggctcttaaacgttgtggtg |
3425077 |
T |
|
| Q |
610 |
ttgcgac |
616 |
Q |
| |
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||||||| |
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| T |
3425076 |
ttgcgac |
3425070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 9832953 - 9832993
Alignment:
| Q |
496 |
gccaaactacaccgctatagcgtgctattgacaacatagct |
536 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||| |
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| T |
9832953 |
gccacactacaccgctatagtgtgctattgacaacatagct |
9832993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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