View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_high_14 (Length: 298)
Name: NF0500_high_14
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 24928792 - 24928919
Alignment:
| Q |
108 |
aaaaaacatacccaagttggacaaatcaagttcctcagagttttgaagaagtagaatgtcattcttttcattctctttctctgctcctcctcatctcaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24928792 |
aaaaaacatacccaagttggacaaatcaagttcctcagagttttgaagaagtagaaggtcattcttttcattctctttctct-ctcctcctcatctcaag |
24928890 |
T |
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| Q |
208 |
gaacaaagcaagctcttcatctctttcct |
236 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24928891 |
gaacaaagcaagctcttcatctctttcct |
24928919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 24927391 - 24927476
Alignment:
| Q |
22 |
tcaatggcatttgtgactccttgtctaaagtaggaaaaagcggtgtatcaggtggtgtaagaagcctgataacaaaaaactcttgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24927391 |
tcaatggcatttgtgactccttgtctaaagtaggaaaaagtggtgtatcaggtggtgtaagaagcctgataacgaaaaactcttgt |
24927476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 31869878 - 31869828
Alignment:
| Q |
170 |
tcttttcattctctttctctgctcctcctcatctcaaggaacaaagcaagct |
221 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31869878 |
tcttttcattctctttctct-ctcctcctcatctcaaggaacaaagcaagct |
31869828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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