View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_high_18 (Length: 276)
Name: NF0500_high_18
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 21546108 - 21546336
Alignment:
| Q |
29 |
aaacaattgcagagctactcatcatcctccgacaatcatgagtttagagttcatgtaactttcatcaacctagtgaaaatcaatagtgaaggaacaattt |
128 |
Q |
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| T |
21546108 |
aaacaattgcagagctactcatcatcctccgacaatcatgagtttagagttcatgtaactttcatcaacctagtgaaaatcaatagtgaaggaacaattt |
21546207 |
T |
|
| Q |
129 |
ctcttatcaattgtgacaccaaaacagcatgagacatgccatttgnnnnnnnnnnnnnnncaattataggaaatcgattgtaaga-caaaggt--tacaa |
225 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||| ||||||| ||||| |
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| T |
21546208 |
ctcttatcaattgagacaccaaaacagcatgacacatgccatttg--aaaaaaaaaaaaacaattatagaaaatcgattgcaagatcaaaggttatacaa |
21546305 |
T |
|
| Q |
226 |
taatggccttctacattcactcaataatgat |
256 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
21546306 |
taatggccttccacattcactcaataatgat |
21546336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 7498637 - 7498563
Alignment:
| Q |
99 |
tagtgaaaatcaatagtgaaggaacaatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
173 |
Q |
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|||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7498637 |
tagtgaaaatgaatagcaaagaaacaatttctcttatcaattgtgacaccaaaacagcatgacacatgccatttg |
7498563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 46885267 - 46885136
Alignment:
| Q |
29 |
aaacaattgcagagctactcatcatcctccgacaatcatgagtttagagttcatgtaactttcatcaacctagtgaaaatcaatagtgaaggaacaattt |
128 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||| ||||||||| | |||||| |
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| T |
46885267 |
aaacaattgcagagctgctcatcatcctccggcaatcatgactttagagttcatgcaactttcatcaacatagtgaaaagc-------------caattt |
46885181 |
T |
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| Q |
129 |
ctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
173 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
46885180 |
ctcttatcaattgtgacaccaaaactacatgacacatgccatttg |
46885136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 37685124 - 37685198
Alignment:
| Q |
99 |
tagtgaaaatcaatagtgaaggaacaatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
173 |
Q |
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|||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37685124 |
tagtgaaaatgaatagcaaagaaacaatttcttttatcaattgtgacaccaaaacagcatgacacatgccatttg |
37685198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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