View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0500_high_2 (Length: 606)
Name: NF0500_high_2
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 12 - 600
Target Start/End: Complemental strand, 14174524 - 14173937
Alignment:
| Q |
12 |
atgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174524 |
atgagactttttccagtcttcatccgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatt |
14174425 |
T |
|
| Q |
112 |
tttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14174424 |
tttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagttttctcctccatttaatttacactatactctcaagctc |
14174325 |
T |
|
| Q |
212 |
caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14174324 |
caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcg |
14174225 |
T |
|
| Q |
312 |
gtag---cnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatatt |
408 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174224 |
gtagtgataaaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatatt |
14174125 |
T |
|
| Q |
409 |
aaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattata |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174124 |
aaagaatattacaatattctctccactctct----cacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatt |
14174029 |
T |
|
| Q |
509 |
ttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14174028 |
ttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
14173937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 600
Target Start/End: Original strand, 28611354 - 28611933
Alignment:
| Q |
12 |
atgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatt |
111 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611354 |
atgagactttttccagtcttcatccgtaaccttatctggctttgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatt |
28611453 |
T |
|
| Q |
112 |
ttt-ggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagct |
210 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611454 |
ttttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtacc---------agtgttctcctccatttaatttacactatactctcgagct |
28611544 |
T |
|
| Q |
211 |
ccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagc |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28611545 |
ccaatcggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagc |
28611644 |
T |
|
| Q |
311 |
ggtagc---nnnnnnnntgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatat |
407 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611645 |
ggtagcgataaaaaaaatgaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatat |
28611744 |
T |
|
| Q |
408 |
taaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611745 |
taaagaatattacaatattctctccactctct----cacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattat |
28611840 |
T |
|
| Q |
508 |
attatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28611841 |
tttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
28611933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 233 - 600
Target Start/End: Complemental strand, 14179057 - 14178691
Alignment:
| Q |
233 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
14179057 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac |
14178958 |
T |
|
| Q |
330 |
accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178957 |
accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
14178858 |
T |
|
| Q |
430 |
tccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttata |
529 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14178857 |
tccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttata |
14178762 |
T |
|
| Q |
530 |
gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14178761 |
gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
14178691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 233 - 600
Target Start/End: Original strand, 28606805 - 28607171
Alignment:
| Q |
233 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
28606805 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac |
28606904 |
T |
|
| Q |
330 |
accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
429 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606905 |
accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
28607004 |
T |
|
| Q |
430 |
tccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttata |
529 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28607005 |
tccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttata |
28607100 |
T |
|
| Q |
530 |
gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28607101 |
gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
28607171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 234 - 600
Target Start/End: Complemental strand, 44161949 - 44161586
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44161949 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
44161850 |
T |
|
| Q |
331 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44161849 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct |
44161752 |
T |
|
| Q |
431 |
ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
530 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44161751 |
ccactctcttacacacaca----agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatag |
44161656 |
T |
|
| Q |
531 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
44161655 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcac |
44161586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 234 - 592
Target Start/End: Complemental strand, 11104829 - 11104477
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
11104829 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca |
11104730 |
T |
|
| Q |
334 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
433 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11104729 |
atatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca |
11104631 |
T |
|
| Q |
434 |
ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
533 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
11104630 |
ctctcttacacacaa-----agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagaga |
11104536 |
T |
|
| Q |
534 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt |
592 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11104535 |
tgatatccacccggtgtatttttcctacactctctggatttactcaacactctattttt |
11104477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 233 - 538
Target Start/End: Original strand, 48826701 - 48827000
Alignment:
| Q |
233 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnnt-gaacac |
331 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48826701 |
ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac |
48826798 |
T |
|
| Q |
332 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
431 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48826799 |
caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctctt |
48826897 |
T |
|
| Q |
432 |
cactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
531 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48826898 |
cgctctct----tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttataga |
48826993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 261 - 431
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
| Q |
261 |
tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata |
360 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| ||||| || ||||| ||| || | || ||||||||||||| || ||||| || ||||| |
|
|
| T |
48708086 |
tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata |
48708185 |
T |
|
| Q |
361 |
ctgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
431 |
Q |
| |
|
|| || ||||||||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
48708186 |
ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc |
48708256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 439
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
| Q |
346 |
gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct |
439 |
Q |
| |
|
||||||| ||||||| |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| ||||| |
|
|
| T |
24726288 |
gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct |
24726381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 12 - 600
Target Start/End: Complemental strand, 12931253 - 12930676
Alignment:
| Q |
12 |
atgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931253 |
atgagactttttccagtcttcatccgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatt |
12931154 |
T |
|
| Q |
112 |
tttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931153 |
tttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccag---------tgttctcctccatttaatttacactatactctcgagctc |
12931063 |
T |
|
| Q |
212 |
caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12931062 |
caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcg |
12930963 |
T |
|
| Q |
312 |
gtagc--nnnnnnnntgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatatta |
409 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930962 |
gtagcgataaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatatta |
12930863 |
T |
|
| Q |
410 |
aagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatat |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
12930862 |
aagaatattacaatattctctccactctct----cacacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattt |
12930767 |
T |
|
| Q |
510 |
tatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12930766 |
tatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
12930676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 234 - 600
Target Start/End: Complemental strand, 12935786 - 12935422
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
12935786 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
12935687 |
T |
|
| Q |
332 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935686 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
12935587 |
T |
|
| Q |
432 |
cactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
531 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12935586 |
cactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttataga |
12935491 |
T |
|
| Q |
532 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12935490 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
12935422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
| Q |
369 |
aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct |
439 |
Q |
| |
|
|||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || ||||||| |
|
|
| T |
26504985 |
aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct |
26505055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 437
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
| Q |
325 |
tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata |
424 |
Q |
| |
|
|||||| ||||||||| || ||||||||||| || |||| |||||| || | ||||||||| ||||||||| |||| ||| ||| |||||||||| | |
|
|
| T |
15589060 |
tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca |
15588961 |
T |
|
| Q |
425 |
ttctctccactct |
437 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
15588960 |
ttttctccactct |
15588948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
| Q |
242 |
tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa |
287 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
26504850 |
tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa |
26504895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 234 - 600
Target Start/End: Complemental strand, 34907503 - 34907139
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
34907503 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
34907404 |
T |
|
| Q |
332 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907403 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
34907304 |
T |
|
| Q |
432 |
cactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
531 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34907303 |
cactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttataga |
34907208 |
T |
|
| Q |
532 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34907207 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
34907139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 234 - 600
Target Start/End: Original strand, 37040426 - 37040791
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
37040426 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
37040525 |
T |
|
| Q |
331 |
ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37040526 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct |
37040625 |
T |
|
| Q |
431 |
ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
530 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37040626 |
ccactctctcacacacaca----agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag |
37040721 |
T |
|
| Q |
531 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37040722 |
agatgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcac |
37040791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 212 - 589
Target Start/End: Complemental strand, 15290616 - 15290243
Alignment:
| Q |
212 |
caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15290616 |
caaccggagctctgataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagc |
15290517 |
T |
|
| Q |
311 |
ggtagcnnnnnnnn---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatat |
407 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
15290516 |
cttagcgataaaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatat |
15290417 |
T |
|
| Q |
408 |
taaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattat |
507 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||| |||||||| | |
|
|
| T |
15290416 |
ttaagaatattacaatattctctccactctct----tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--t |
15290324 |
T |
|
| Q |
508 |
attatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatt |
589 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
15290323 |
atttcagcacctagaagttatagagatgatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt |
15290243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 234 - 539
Target Start/End: Complemental strand, 12099361 - 12099060
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca |
333 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || || |||| |||| | || |
|
|
| T |
12099361 |
tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca |
12099262 |
T |
|
| Q |
334 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
433 |
Q |
| |
|
|||||| ||||| ||||||||||||| || |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12099261 |
atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca |
12099162 |
T |
|
| Q |
434 |
ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
533 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| ||||||| ||| |||||| |||| |||||| ||||| |||||| |||||||||||| |
|
|
| T |
12099161 |
ctctct----tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagaga |
12099066 |
T |
|
| Q |
534 |
tgatac |
539 |
Q |
| |
|
|||||| |
|
|
| T |
12099065 |
tgatac |
12099060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 382 - 593
Target Start/End: Complemental strand, 12082227 - 12082022
Alignment:
| Q |
382 |
aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgag |
481 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
12082227 |
aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa----agagatacaatatagtgtttctaatgag |
12082133 |
T |
|
| Q |
482 |
acctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaac |
581 |
Q |
| |
|
|| || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| | | ||||||||||| |||| |
|
|
| T |
12082132 |
actcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaac |
12082034 |
T |
|
| Q |
582 |
actctatttttc |
593 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
12082033 |
actctaattttc |
12082022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 177 - 439
Target Start/End: Original strand, 2757156 - 2757418
Alignment:
| Q |
177 |
ctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattcc |
276 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||| | || ||||||||| |||||||||||||||||||| |
|
|
| T |
2757156 |
ctcctccatttaatttacactataatctcgagctccaacaaatgctcttatatcacttgttgtgttcaacgagcttattacaagtgtaaattaaaattcc |
2757255 |
T |
|
| Q |
277 |
aaaatccaaaagagattggatcttgcagcgcagcggtagc-nnnnnnnntgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaacca |
375 |
Q |
| |
|
||||| ||||||| |||| || ||||| | ||| || | | ||||||||||||||| || ||| |||| |||| || | |||||||||| |
|
|
| T |
2757256 |
aaaattcaaaagaaattgaattatgcagtgtagcaataacgataaaaatttaacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaacca |
2757355 |
T |
|
| Q |
376 |
cgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct |
439 |
Q |
| |
|
| |||||| | | |||||||||||||||||| || |||||| || ||||||||||||||||| |
|
|
| T |
2757356 |
tgagacaaattttg-aaaatattccactatatttaaaaatattgcactattctctccactctct |
2757418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc |
316 |
Q |
| |
|
|||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| ||||||| |
|
|
| T |
12084751 |
tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc |
12084669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 51303241 - 51302937
Alignment:
| Q |
12 |
atgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatt |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51303241 |
atgagactttttccagtcttcatttgtcaccttatatggcttagtgtctcccttttctacaggatcatacatatccttgcagtaaagtatatcctccatt |
51303142 |
T |
|
| Q |
112 |
tttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
51303141 |
tttggcttccaaatggagtagtttgtagaagtgagtttaatcattgtaccagtgttaccaatgttctcttccatttaatttacactataatctcgagctc |
51303042 |
T |
|
| Q |
212 |
caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcg |
311 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51303041 |
caactggagctccgataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcg |
51302942 |
T |
|
| Q |
312 |
gtagc |
316 |
Q |
| |
|
||||| |
|
|
| T |
51302941 |
gtagc |
51302937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 455 - 593
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
| Q |
455 |
gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51302306 |
gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt |
51302207 |
T |
|
| Q |
555 |
ttcccacactctctggatttactcaacactctatttttc |
593 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302206 |
tatccacactctctggatttactcaatactctatttttc |
51302168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 24876579 - 24876720
Alignment:
| Q |
19 |
tttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggct |
118 |
Q |
| |
|
|||||||||||||||| || | |||||||||| |||||||||||||||| |||||||||| |||| ||| ||||||||||||||||| |||| | || |
|
|
| T |
24876579 |
tttttccagtcttcattcgtaattttatctggctccgtgtctcccttttctgcaggatcatatgtatcattgcagtaaagtatatcctccgttttcgact |
24876678 |
T |
|
| Q |
119 |
tccaaatggagtagtttgtagaagtgagtttaatcatcgtac |
160 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
24876679 |
tccaaatgaagtagtttctagaagtgagtttaatcatcgtac |
24876720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
| Q |
325 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302344 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
51302308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 234 - 584
Target Start/End: Original strand, 29106878 - 29107224
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca |
333 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29106878 |
tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca |
29106977 |
T |
|
| Q |
334 |
atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
433 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29106978 |
atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
29107077 |
T |
|
| Q |
434 |
ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
533 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
29107078 |
ctctct----tacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaaga |
29107172 |
T |
|
| Q |
534 |
tgata-cccacccggtgtatttttcccacactctctggatttactcaacact |
584 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107173 |
tgataccccacccaatgtatttttcccacactctctggatttactcaacact |
29107224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 233 - 592
Target Start/End: Original strand, 42910992 - 42911346
Alignment:
| Q |
233 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| | | |||||||| |
|
|
| T |
42910992 |
ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc |
42911091 |
T |
|
| Q |
333 |
aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc |
432 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42911092 |
aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcc |
42911190 |
T |
|
| Q |
433 |
actctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag |
532 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
42911191 |
actctctcacacacaca----aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagag |
42911286 |
T |
|
| Q |
533 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt |
592 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911287 |
atgatacccacccagtgtattttttccacactctctggatttactcaacactctattttt |
42911346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 167 - 314
Target Start/End: Original strand, 38994631 - 38994779
Alignment:
| Q |
167 |
taccagtgttctcc-tccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaa |
265 |
Q |
| |
|
|||||||||||||| ||| |||||| |||| ||| ||||||| | |||| ||||||||||||||||||||||||| ||||| ||||| || ||||||| |
|
|
| T |
38994631 |
taccagtgttctccctccgtttaatatacataataatctcgagtttcaactagagctctgataccacttgttgggcttgacgatcttaatgctagtgtaa |
38994730 |
T |
|
| Q |
266 |
attaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta |
314 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||||||| ||||||||| |
|
|
| T |
38994731 |
attaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta |
38994779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 416
Target Start/End: Original strand, 38996936 - 38997320
Alignment:
| Q |
12 |
atgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatt |
111 |
Q |
| |
|
|||||||||||| |||| || ||| ||||| || ||| | ||| || |||||||||||||||| |||||||||||| ||| |||| |||||||| |||| |
|
|
| T |
38996936 |
atgagacttttttcagtttttatcagtcactttgtctag-ttcatgcctcccttttctacagggtcatacatatccatgttataaattatatccttcatt |
38997034 |
T |
|
| Q |
112 |
tttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctc |
211 |
Q |
| |
|
|| | ||| || || ||||||||||||||||||||| | | ||| ||| |||||| |||||| ||||||||| ||| |||| |
|
|
| T |
38997035 |
ttcgacttttaactgaagtagtttgtagaagtgagttaagttatcatactagtgtt---------ctcctctatttaattt----------ctcaagctt |
38997115 |
T |
|
| Q |
212 |
caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcg |
311 |
Q |
| |
|
|||| |||||||| |||| |||||||||| |||| | |||||| || |||||||||||||||||| ||||||||||| ||| |||||| || ||| || |
|
|
| T |
38997116 |
caactggagctctaatactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaagaaattaaatcttgaagtgcatcg |
38997215 |
T |
|
| Q |
312 |
gtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaa |
411 |
Q |
| |
|
| ||||| |||||||| |||| ||||||||||||||| || ||||||| |||||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
38997216 |
acaatgataaaaaagaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaa |
38997315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 38994541 - 38994624
Alignment:
| Q |
13 |
tgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaa |
96 |
Q |
| |
|
||||||| ||| ||||||||||| |||| || |||| |||| |||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
38994541 |
tgagactctttttagtcttcatctatcactttgtctgacttcatgtcccccttttctacatgaacatacatatccttgttgtaa |
38994624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 233 - 600
Target Start/End: Complemental strand, 8539549 - 8539183
Alignment:
| Q |
233 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn-tgaacac |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
8539549 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat |
8539450 |
T |
|
| Q |
332 |
caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
8539449 |
caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc |
8539350 |
T |
|
| Q |
432 |
cactctctnnnnnnnnnnnnnnagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttat |
528 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| ||||||| |
|
|
| T |
8539349 |
cactctct----tacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttat |
8539255 |
T |
|
| Q |
529 |
agagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac |
600 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| |||||| |
|
|
| T |
8539254 |
agagatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcac |
8539183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 234 - 416
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
| Q |
234 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnntgaacacc |
332 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || || |||||| | |
|
|
| T |
2100199 |
tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc |
2100298 |
T |
|
| Q |
333 |
aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata |
416 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2100299 |
aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata |
2100379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 439
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
| Q |
409 |
aaagaatattacaatattctctccactctct |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2100723 |
aaagaatattacaatattctctccactctct |
2100753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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