View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0500_high_24 (Length: 232)
Name: NF0500_high_24
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 24928792 - 24928913
Alignment:
| Q |
103 |
aaaaaacatacccaagttggacaaatcaagttcctcagagttttgaagaagtagaatgtcattcttttcattctctttctctctcctcctcatctcaagg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24928792 |
aaaaaacatacccaagttggacaaatcaagttcctcagagttttgaagaagtagaaggtcattcttttcattctctttctctctcctcctcatctcaagg |
24928891 |
T |
|
| Q |
203 |
aacaaagcaagctcttcatctc |
224 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24928892 |
aacaaagcaagctcttcatctc |
24928913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 24927392 - 24927476
Alignment:
| Q |
18 |
caatggcatttgtgactccttgtctaaagtaggaaaaagcggtgtatcaggtggtgtaagaagcctgataacaaaaaactcttgt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24927392 |
caatggcatttgtgactccttgtctaaagtaggaaaaagtggtgtatcaggtggtgtaagaagcctgataacgaaaaactcttgt |
24927476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 31869878 - 31869828
Alignment:
| Q |
165 |
tcttttcattctctttctctctcctcctcatctcaaggaacaaagcaagct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869878 |
tcttttcattctctttctctctcctcctcatctcaaggaacaaagcaagct |
31869828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1479 times since January 2019
Visitors: 3452