View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_high_7 (Length: 369)
Name: NF0500_high_7
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 55 - 344
Target Start/End: Original strand, 4517031 - 4517320
Alignment:
| Q |
55 |
tccttcagtttggccaaatttctacaaaacagcagagaaaattcatccaataaagaacaagagttcactacaaagtgatatttcatagagaaacaaatac |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
4517031 |
tccttcagtttggccaaatttctacaaaacagcagagaaaattcatccaataaagaacaagagttcactacaaagtgatattacataaagaaacaaatac |
4517130 |
T |
|
| Q |
155 |
aatgtttatgtgagttctcctcttctcaaaatttgaatggtatatgaagattgttgtgagactatatattgtgatttgaataatcattacatattagttg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4517131 |
aatgtttatgtgagttctcctcttctcaaaatttgaatggtacatgaagattgttgtgagactatatattgtgatttgaataatcattacatattagttg |
4517230 |
T |
|
| Q |
255 |
ttttgtgagtgcatgtttggagtttctatatagtttctttcaattttaggtgaccctttagtttgaatctatggctttctaagggtgtgg |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4517231 |
ttttgtgagtgcatgtttggagtttctatatagtttctttcaattttaggtcaccctttagtttgaatctatggctttctaagggtgtgg |
4517320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 3432532 - 3432585
Alignment:
| Q |
7 |
ttcgtatcaaacacaatcccttcaataactaaaacctcttcttcttcttccttc |
60 |
Q |
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| T |
3432532 |
ttcgtatcaaacacaatcccttcaataactaaaacctcttcttcttcttccttc |
3432585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 3426366 - 3426415
Alignment:
| Q |
11 |
tatcaaacacaatcccttcaataactaaaacctcttcttcttcttccttc |
60 |
Q |
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|||||||| ||||||||||||| |||||||||||||| | |||||||||| |
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| T |
3426366 |
tatcaaactcaatcccttcaatcactaaaacctcttccttttcttccttc |
3426415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 11897928 - 11897879
Alignment:
| Q |
11 |
tatcaaacacaatcccttcaataactaaaacctcttcttcttcttccttc |
60 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |||||||||||| |
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| T |
11897928 |
tatcaaactcaatcccttcaatcactaaaacctcttcctcttcttccttc |
11897879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 11913004 - 11912951
Alignment:
| Q |
7 |
ttcgtatcaaacacaatcccttcaataactaaaacctcttcttcttcttccttc |
60 |
Q |
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|||||||||||| ||||||||| ||| || |||||||||| |||||||||||| |
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|
| T |
11913004 |
ttcgtatcaaactcaatccctttaatcgctgaaacctcttcctcttcttccttc |
11912951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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