View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_high_9 (Length: 356)
Name: NF0500_high_9
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 52 - 258
Target Start/End: Original strand, 30967095 - 30967301
Alignment:
| Q |
52 |
gacatctcaactattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtt |
151 |
Q |
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| T |
30967095 |
gacatctcaactattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtt |
30967194 |
T |
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| Q |
152 |
taatagctgaactattatcacactgaatgacagtgcaatttgttccaggatccttctgagccaaactgcttgacaagcacaagaagctgcagctacaaac |
251 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30967195 |
taatagatgaactattatcacactgaatgacagtgcaatttgttccaggatccttctgagctaaactgcttgacaagcacaagaagctgcagctacaaac |
30967294 |
T |
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| Q |
252 |
tctgctt |
258 |
Q |
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||||||| |
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| T |
30967295 |
tctgctt |
30967301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 30967840 - 30967927
Alignment:
| Q |
257 |
tttccatagaatgtttgaactcttcaaacactacttcatcatttcaagtgtagattaagtcatctacatacaaacttacaataagtat |
344 |
Q |
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| T |
30967840 |
tttccatagaatgtttgaactcttcaaacacttcttcatcatttcaagtgtagattaagtcatctacatacaaacttacggtaagtat |
30967927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 9938644 - 9938751
Alignment:
| Q |
66 |
tccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagctgaacta |
165 |
Q |
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| T |
9938644 |
tccttcttctgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaacta |
9938743 |
T |
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| Q |
166 |
ttatcaca |
173 |
Q |
| |
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|||||||| |
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| T |
9938744 |
ttatcaca |
9938751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 382140 - 382179
Alignment:
| Q |
17 |
aacttatggttatcaatatcttaagatgcacgtgagacat |
56 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||| |
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| T |
382140 |
aactcatggttatcaatatcttaagatgcatgtgagacat |
382179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 42971949 - 42971834
Alignment:
| Q |
58 |
tcaactattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatag |
157 |
Q |
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||||| ||||| | ||| ||||| ||||| ||||| |||||||||||||| || ||||| || ||||||||| | ||||||||| | ||| ||||| | |
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| T |
42971949 |
tcaacaattccatctttagtaaggtcccttagaaaatggtatctaacatcaatgtgtttgcatctcccatgcatgataggattttttgacagcttaatgg |
42971850 |
T |
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| Q |
158 |
ctgaactattatcaca |
173 |
Q |
| |
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|||||||||||||| |
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|
| T |
42971849 |
aagaactattatcaca |
42971834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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