View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0500_low_21 (Length: 293)
Name: NF0500_low_21
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_21 |
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| [»] scaffold0096 (2 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 44580 - 44844
Alignment:
| Q |
1 |
cattgtcttcaccaatttaattatacacatttttt-ctacttaaagccatgccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctctag |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44580 |
cattgtcttcaccaatttaattatgcacgttttttgctacttaaagccatgccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctctag |
44679 |
T |
|
| Q |
100 |
aagtgtttagttgctcaaagtgtttagttacacacctttggaacctacaactatgagacatcatttaattcttggnnnnnnngtgtttctgaatgttatg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
44680 |
aagtgtttagttgctcaaagtgtttagttgcacacctttggaacctacaactaggagacatcatttaattcttggtttttttgtgtttctgaatgttatg |
44779 |
T |
|
| Q |
200 |
ttcacgccaactaagagcctcatgtcattcctataaattggtgataccatttggtttgtttggcc |
264 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44780 |
ttcacgccaactaagaacctcatgtcattcctataaattggtgataccatttggtttgtttggcc |
44844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 33853 - 34118
Alignment:
| Q |
1 |
cattgtcttcaccaatttaattatacacattttttc-tacttaaagccatgccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctctag |
99 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
33853 |
cattgtcttcaccaatttaattatgcgcgttttttcctacttaaagtcatgccaacaataaatgcaaacatgaaaaaacgtgcaagacacggggctctag |
33952 |
T |
|
| Q |
100 |
aagtgtttagttgctcaaagtgtttagttacacacctttggaacctacaactatgagacatcatttaattcttgg-nnnnnnngtgtttctgaatgttat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33953 |
aagtgtttagttgctcaaagtgtttagttgcacacctttggaacctacaactaggagacatcatttaattcttggttttttttgtgtttctgaatgttat |
34052 |
T |
|
| Q |
199 |
gttcacgccaactaagagcctcatgtcattcctataaattggtgataccatttggtttgtttggcc |
264 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
34053 |
gttcacgccaactaaaaacctcatgtcattcctataaattggtgatcccatttggtttgtttggcc |
34118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 38862311 - 38862047
Alignment:
| Q |
1 |
cattgtcttcaccaatttaattatacacatttttt-ctacttaaagccatgccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctctag |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38862311 |
cattgtcttcaccaatttaattatgcacgttttttgctacttaaagccatgccaataataaatgcaaacatgaaaaaacatgcaagacgcggggctctag |
38862212 |
T |
|
| Q |
100 |
aagtgtttagttgctcaaagtgtttagttacacacctttggaacctacaactatgagacatcatttaattcttggnnnnnnngtgtttctgaatgttatg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
38862211 |
aagtgtttagttgctcaaagtgtttagttgcacacctttggaacctacaactaggagacatcatttaattcttggtttttttgtgtttctgaatgttatg |
38862112 |
T |
|
| Q |
200 |
ttcacgccaactaagagcctcatgtcattcctataaattggtgataccatttggtttgtttggcc |
264 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38862111 |
ttcacgccaactaagaacctcatgtcattcctataaattggtgacaccatttggtttgtttggcc |
38862047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 38642545 - 38642587
Alignment:
| Q |
127 |
ttacacacctttggaacctacaactatgagacatcatttaatt |
169 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
38642545 |
ttacacacctttgagacctacaactatgagacatcatttaatt |
38642587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 31145360 - 31145624
Alignment:
| Q |
1 |
cattgtcttcaccaatttaattatacacattttttc-tacttaaagccatgccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctctag |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
31145360 |
cattgtcttcaccaatttaattatgcacgtttttttgtacttaaagtcatgccaataataaatgcaaacatgaaaaaacgtgcaagacacggggctctat |
31145459 |
T |
|
| Q |
100 |
aagtgtttagttgctcaaagtgtttagttacacacctttggaacctacaactatgagacatcatttaattcttggnnnnnnngtgtttctgaatgttatg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
31145460 |
aagtgtttagttgctcaaagtgtttagttgcacacctttggaacctacaactaggagacatcatttaattcttggtttttttgtgtttctgaatgttatg |
31145559 |
T |
|
| Q |
200 |
ttcacgccaactaagagcctcatgtcattcctataaattggtgataccatttggtttgtttggcc |
264 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145560 |
ttcacgccaactaagaacctcatgtcattcctataaattggtgataccatttggtttgtttggcc |
31145624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 16684863 - 16684905
Alignment:
| Q |
127 |
ttacacacctttggaacctacaactatgagacatcatttaatt |
169 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16684863 |
ttacacacctttgagacctacaactatgagacatcatttaatt |
16684905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 28322781 - 28322534
Alignment:
| Q |
1 |
cattgtcttcaccaatttaattatacacatttttt-ctacttaaagccatgccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctctag |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
28322781 |
cattgtcttcaccaatttaattatgcacgttttttgctacttaaagtcatgccaataataaatgcaaacatgaaaaaatgtgcaagacgcgggactctag |
28322682 |
T |
|
| Q |
100 |
aagtgtttagttgctcaaagtgtttagttacacacctttggaacctacaactatgagacatcatttaattcttggnnnnnnngtgtttctgaatgttatg |
199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
28322681 |
aagtgtttagttgc-----------------acacctttggaacctacaactaggagacataatttaattcttggtttttttgtgtttctgaatgttatg |
28322599 |
T |
|
| Q |
200 |
ttcacgccaactaagagcctcatgtcattcctataaattggtgataccatttggtttgtttggcc |
264 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28322598 |
ttcacgccaactaagaacctcatgttattcctataaattggtgataccatttggtttgtttggcc |
28322534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 264
Target Start/End: Original strand, 3450875 - 3451003
Alignment:
| Q |
136 |
tttggaacctacaactatgagacatcatttaattcttggnnnnnnngtgtttctgaatgttatgttcacgccaactaagagcctcatgtcattcctataa |
235 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
3450875 |
tttgggacctacaactaggagacatcatttaattctgattttttttgtgtttctgcatgttatgttcaagccaactaagaaccttatgtcattcctataa |
3450974 |
T |
|
| Q |
236 |
attggtgataccatttggtttgtttggcc |
264 |
Q |
| |
|
||||||||||||||||||| || |||||| |
|
|
| T |
3450975 |
attggtgataccatttggtctgcttggcc |
3451003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 20388080 - 20388161
Alignment:
| Q |
183 |
tgtttctgaatgttatgttcacgccaactaagagcctcatgtcattcctataaattggtgataccatttggtttgtttggcc |
264 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||| ||| | |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20388080 |
tgtttctgcatgttatgttcacgccaactaacaaccttatgccgttcctataaattggtgataccatttggtcggtttggcc |
20388161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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