View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_22 (Length: 285)
Name: NF0500_low_22
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 112 - 280
Target Start/End: Complemental strand, 43533149 - 43532981
Alignment:
| Q |
112 |
gtcggttatatcagttgatccaacatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa |
211 |
Q |
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| T |
43533149 |
gtcggttatatcagttgatccaatatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa |
43533050 |
T |
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| Q |
212 |
atgctaaccaattttcttcatagagattacagtcttatttattgcacgtcccattgctttgagaataat |
280 |
Q |
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| T |
43533049 |
atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataat |
43532981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 43528863 - 43528739
Alignment:
| Q |
116 |
gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaaat |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
43528863 |
gttatatcagttgatccaacttgagtgttctgatgaagaccaacaatccttctctgaaacaagtagacagagcggtcacaatagcaaaacaagagaaaat |
43528764 |
T |
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| Q |
214 |
gctaaccaattttcttcatagagat |
238 |
Q |
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| T |
43528763 |
gccaaccaattttctgcatagagat |
43528739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 49971939 - 49971878
Alignment:
| Q |
6 |
gccgtcacaatcattctcttcttctcgcaactcattctcaatttcgatgaaaatcataaagg |
67 |
Q |
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| T |
49971939 |
gccgtcacaatcatcctcttcttctcgcaactcattctcaatttcgatgaaaatcataaagg |
49971878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 43537549 - 43537478
Alignment:
| Q |
116 |
gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagag |
185 |
Q |
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| T |
43537549 |
gttatatcagttgatccaatttgagtgttctgatgcagaccaacaatccttctctgaaacaagtagaaagag |
43537478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 43528705 - 43528666
Alignment:
| Q |
237 |
attacagtcttatttattgcacgtcccattgctttgagaa |
276 |
Q |
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| T |
43528705 |
attacagtcttatttattgcacgtcccattgctttgagaa |
43528666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 43537391 - 43537355
Alignment:
| Q |
237 |
attacagtcttatttattgcacgtcccattgctttga |
273 |
Q |
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| T |
43537391 |
attacagtcttatttattgcacgtcccattgctttga |
43537355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 43528964 - 43528929
Alignment:
| Q |
77 |
aatcacactcatgcatatacataaattatttgacag |
112 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
43528964 |
aatcatactcatgcatatacataaattatttgacag |
43528929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 43522939 - 43522905
Alignment:
| Q |
240 |
acagtcttatttattgcacgtcccattgctttgag |
274 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
43522939 |
acagtcttatttatcgcacgtcccattgctttgag |
43522905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 43523107 - 43523046
Alignment:
| Q |
116 |
gttatatcagttgatccaacatgagtgttctgatg--aacaaacaatccttctctgaaacaa |
175 |
Q |
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||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||| |
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| T |
43523107 |
gttatatcagttgatccaataatagtgttctgatgcagaccaacaatccttctctgaaacaa |
43523046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 43533248 - 43533211
Alignment:
| Q |
76 |
caatcacactcatgcatatacataaatt-atttgacag |
112 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
43533248 |
caatcacactcatgcatatacataaattaatttgacag |
43533211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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