View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_23 (Length: 279)
Name: NF0500_low_23
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 32 - 269
Target Start/End: Complemental strand, 34705690 - 34705453
Alignment:
| Q |
32 |
gttcctagaacagacagaagctttggtgcaaatccacacgtgacccgtatgatctgtcaaatagaagtccttggtgtttaccggcataacagagttcaga |
131 |
Q |
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| T |
34705690 |
gttcctggaacggacagaagcttgggtgcaaatccacacgtgacccgcatgatctttcaaatagaagtccttggtgtttactggcataacagagttcaga |
34705591 |
T |
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| Q |
132 |
actctgtcatatgaaagggtctgaacaaaaacaaaagcacaaattagtgacatttatataaacaactgtttatacattcgacagaaatcaccacaaaata |
231 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34705590 |
actctgtcatatgaaagggtctgaacaaaaacaaacgcacaaattagtgacatttatataaacaactgtttatacattcgacagaaatcaccacaaaata |
34705491 |
T |
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| Q |
232 |
acgtagcaccataccagaaaccatttttcctcttcatc |
269 |
Q |
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| T |
34705490 |
acgtagcaccataccagaaatcatttgtccgcttcatc |
34705453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 28547511 - 28547748
Alignment:
| Q |
32 |
gttcctagaacagacagaagctttggtgcaaatccacacgtgacccgtatgatctgtcaaatagaagtccttggtgtttaccggcataacagagttcaga |
131 |
Q |
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|||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28547511 |
gttcctggaacggacagaagcttgggtgcaaatccacacgtgacccgcatgatctttcaaatagaagtccttggtgtttactggcataacagagttcaga |
28547610 |
T |
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| Q |
132 |
actctgtcatatgaaagggtctgaacaaaaacaaaagcacaaattagtgacatttatataaacaactgtttatacattcgacagaaatcaccacaaaata |
231 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28547611 |
actctgtcatatgaaagggtctgaacaaaaacaaacgcacaaattagtgacatttatataaacaactgtttatacattcgtcagaaatcaccacaaaata |
28547710 |
T |
|
| Q |
232 |
acgtagcaccataccagaaaccatttttcctcttcatc |
269 |
Q |
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| T |
28547711 |
acgtagcaccataccagaaatcatttgtccgcttcatc |
28547748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 32 - 269
Target Start/End: Complemental strand, 41868899 - 41868662
Alignment:
| Q |
32 |
gttcctagaacagacagaagctttggtgcaaatccacacgtgacccgtatgatctgtcaaatagaagtccttggtgtttaccggcataacagagttcaga |
131 |
Q |
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|
|||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41868899 |
gttcctggaacggacagaagcttgggtgcaaatccacacgtgacccgcatgatctttcaaatagaagtccttggtgtttactggcataacagagttcaga |
41868800 |
T |
|
| Q |
132 |
actctgtcatatgaaagggtctgaacaaaaacaaaagcacaaattagtgacatttatataaacaactgtttatacattcgacagaaatcaccacaaaata |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41868799 |
actctgtcatatgaaagggtctgaacaaaaacaaacgcacaaattagtgacatttatataaacaactgtttatacattcggcagaaatcaccacaaaata |
41868700 |
T |
|
| Q |
232 |
acgtagcaccataccagaaaccatttttcctcttcatc |
269 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||| |
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|
| T |
41868699 |
acgtagcaccataccagaaatcatttgtccgcttcatc |
41868662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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