View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_26 (Length: 263)
Name: NF0500_low_26
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 38679507 - 38679731
Alignment:
| Q |
23 |
cacagatacagtttgttgacgaatatcgttacacactgcatcatttcttgctgcccataacttccaaagaagcattatgtagtattagacaaaggaaaga |
122 |
Q |
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| T |
38679507 |
cacagatacagtttgttgacgaatatcgttacacactgcatcatttcttgctgcccataacttccaaagaagcattatgtagcattagacaaaggaaaga |
38679606 |
T |
|
| Q |
123 |
ggaatgcaatttgcaaaacaatagtcgcgcatatgacaatcaatgtagttgtgcaaaattaagtacttgtttggtttggcgtttgaagaagagttttcca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
38679607 |
ggaatgcaatttgcaaaacaatagtcgcgcatatgacaatcaatgtagttgtgcaaaattaagttc--------tttggcgtttgaagaagagttttcca |
38679698 |
T |
|
| Q |
223 |
tgtcacacttatctactatttgaagtgcttttt |
255 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38679699 |
tgtcacacttatctactatttgaagtgcttttt |
38679731 |
T |
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