View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_3 (Length: 557)
Name: NF0500_low_3
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 48 - 547
Target Start/End: Original strand, 2082480 - 2082979
Alignment:
| Q |
48 |
aaaatcattgttcaaagcgagtgataacagtaagattgttggtggtgcacttcattgtctttaacgcgactgttaccaatcacctaactgattttagttt |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2082480 |
aaaatcattgttcaaagcgagtgataacagtaagattgttggtggtgcacttcattgtctttaacgcgactgttaccaatcacctaactgattttagttt |
2082579 |
T |
|
| Q |
148 |
tatgtcgctttaacataaatctatgattatcatcttacaaagtgaagaagagaaataaaaatataaagaaaatatgatggtgtataattttctttttcag |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2082580 |
tatgtcgctttaacataaatctatgattatcatcttacaaagtgaagaagagaaataaaaatataaagaaaatatgatggtgtataattttctttttcag |
2082679 |
T |
|
| Q |
248 |
gctgaaaatccatttcttacatagttgattagaaactttacaaaaattaaaattagatcctctacggctgcagtatgcatctgcaagaaccaggtacgca |
347 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2082680 |
cctgaaaatccatttcttacatagttaattagaaactttacaaaaattaaaattagatcctctacggctgcagtatgcatctgcaagaaccaggtacgca |
2082779 |
T |
|
| Q |
348 |
aaagtcttaacagtttctacaattgcgcatcatatggatacgtatctgcaaatattagacagtgtatcagaattaaagacagcagtgtcacaaacattat |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2082780 |
aaagtcttaacagtttctacaattgcgcatcatatggatacgtatctgcaaatattagacagtgtatcagaattaaagacagcagtgtcacaaacattat |
2082879 |
T |
|
| Q |
448 |
tatagtactacaggatacaaaagatgaacactttgtgagctttttgaccttttggcaacacgaaaaggaagccttgcctaccagctgaatgaaatctgtg |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2082880 |
tatagtactacaggatacaaaagatgaacactttgtgagctttttgaccttttggcaacacgaaaaggaagccttgcctaccagctgaatgaaatctgtg |
2082979 |
T |
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