View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_30 (Length: 251)
Name: NF0500_low_30
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_30 |
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| [»] scaffold0501 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 15816991 - 15816751
Alignment:
| Q |
1 |
tgaaatcttcacccaatttcagcggtcgtttccagctagggttagcaaccacttgagacctcacaaccccttatcc-attccattgatgagaatgagagt |
99 |
Q |
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| T |
15816991 |
tgaaatcttcacccaatttcagcggtcgtttccagctagggttagcaaccatttgagacctcacaacccctcatcccattccattgatgaacatgatagt |
15816892 |
T |
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| Q |
100 |
tggttcgtggatgattgaaatttcaggaacattttgattgagtattgcaattagagcccactcctctccttgatatattgtaatcttgctttgtaatctc |
199 |
Q |
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| T |
15816891 |
tacttcttggataattgaaatttcagcaacattttgattgattactgcaattagagcccactcctctccttgatatattgtaatcttgctttgtaatctc |
15816792 |
T |
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| Q |
200 |
taaactattctattaattattgcaattatgttttcattcat |
240 |
Q |
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| T |
15816791 |
taaactactctattaattattgcaattatgttttcattcat |
15816751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 15833463 - 15833264
Alignment:
| Q |
41 |
gttagcaaccacttgagacctcacaaccccttatccattccattgatgagaatgagagttggttcgtggatgattgaaatttcaggaacattttgattga |
140 |
Q |
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| T |
15833463 |
gttagcaaccacttgagacctcacaacccctcatccattccattgatgagaatgagagttagttcgtggataattgaaatttcaggaacattttgattga |
15833364 |
T |
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| Q |
141 |
gtattgcaattagagcccactcctctccttgatatattgtaatcttgctttgtaatctctaaactattctattaattattgcaattatgttttcattcat |
240 |
Q |
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| T |
15833363 |
gtactgcaattagagcccactcctctccttgatatattgtaatcttgctttgtaatttctaaactattctattaattattgcaattatgttttcattcat |
15833264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 2994539 - 2994602
Alignment:
| Q |
176 |
attgtaatcttgctttgtaatctctaaactattctattaattattgcaattatgttttcattca |
239 |
Q |
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| T |
2994539 |
attgtaatattcctttgtaaattctaaactattctattaatcattgcaattatgttttcattca |
2994602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 1903090 - 1903146
Alignment:
| Q |
13 |
ccaatttcagcggtcgtttccagctagggttagcaaccacttgagacctcacaaccc |
69 |
Q |
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| T |
1903090 |
ccaatttaagcggtcgtttccaactagggttagcagccacttaagatctcagaaccc |
1903146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 13817267 - 13817350
Alignment:
| Q |
158 |
cactcctctccttgatatattgtaatcttgctttgtaatctctaaactattctattaattattgcaattatgttttcattcatc |
241 |
Q |
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| T |
13817267 |
cactcttctccttcacatattataatcttcctttatatactctaaactcttaaattaattattgcaatcttgttttcattcatc |
13817350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0501 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0501
Description:
Target: scaffold0501; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 9854 - 9813
Alignment:
| Q |
199 |
ctaaactattctattaattattgcaattatgttttcattcat |
240 |
Q |
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| T |
9854 |
ctaaactcttctattaattattgcaattacattttcattcat |
9813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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