View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_34 (Length: 227)
Name: NF0500_low_34
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 24563711 - 24563559
Alignment:
| Q |
1 |
aagaagatatgctcaactaaagataatgagttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttgg |
100 |
Q |
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| T |
24563711 |
aagaagatatgctcaactaaagataatgagttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttatgaaccttcttgg |
24563612 |
T |
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| Q |
101 |
aattggttcggatcacactgttatctcaaaagctttggaagatatctcctatg |
153 |
Q |
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| T |
24563611 |
aattggttcggatcacactgttatctcaaaagctttggaagatatctcctatg |
24563559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 44337525 - 44337428
Alignment:
| Q |
31 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctca |
128 |
Q |
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| T |
44337525 |
ttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttacgcaccttcttgaatttggttcggatcacactgctatctca |
44337428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 45536177 - 45536235
Alignment:
| Q |
31 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatg |
89 |
Q |
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||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
45536177 |
ttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatg |
45536235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9798619 - 9798586
Alignment:
| Q |
1 |
aagaagatatgctcaactaaagataatgagttga |
34 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
9798619 |
aagaagatatgctcaactaaagataaggagttga |
9798586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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