View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_38 (Length: 206)
Name: NF0500_low_38
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_38 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 11321210 - 11321324
Alignment:
| Q |
92 |
gagtgagatgaataggtgatgattgaattccggtaagattagaatcctttaaatcggctcggaaaatgctccaccaaccgtcatcggcgattctgtggaa |
191 |
Q |
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|||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11321210 |
gagtgatacgaataggtgaggattgaattccggtaagattagaatcctttaaatcggctcggaaaatgctccaccaaccgtcatcggcgattctgtggaa |
11321309 |
T |
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| Q |
192 |
gaacaccgttgaatc |
206 |
Q |
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| T |
11321310 |
gaacaccgttgaatc |
11321324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 11479231 - 11479345
Alignment:
| Q |
92 |
gagtgagatgaataggtgatgattgaattccggtaagattagaatcctttaaatcggctcggaaaatgctccaccaaccgtcatcggcgattctgtggaa |
191 |
Q |
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|||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11479231 |
gagtgatacgaataggtgaggattgaattccggtaagattagaatcctttaaatcggctcggaaaatgctccaccaaccgtcatcggcgattctgtggaa |
11479330 |
T |
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| Q |
192 |
gaacaccgttgaatc |
206 |
Q |
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| T |
11479331 |
gaacaccgttgaatc |
11479345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 11459878 - 11459927
Alignment:
| Q |
157 |
atgctccaccaaccgtcatcggcgattctgtggaagaacaccgttgaatc |
206 |
Q |
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| T |
11459878 |
atgctccaccaaccgtcttcggcgattttgtggaagaacaatgttgaatc |
11459927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 30441745 - 30441849
Alignment:
| Q |
101 |
gaataggtgatgattgaattccggtaagattagaatcctttaaatcggctcggaaaatgctccaccaaccgtcatcggcgattctgtggaagaacaccgt |
200 |
Q |
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| T |
30441745 |
gaattggtgaggattgaattccggtaagattcgaatcctgtaaatcgactcggaaaatgctccaccaaccatcatcggcgattctgtgaaagaacaccgt |
30441844 |
T |
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| Q |
201 |
tgaat |
205 |
Q |
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||||| |
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| T |
30441845 |
tgaat |
30441849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 13040572 - 13040504
Alignment:
| Q |
106 |
ggtgatgattgaattccggtaagattagaatcctttaaatcggctcggaaaatgctccaccaaccgtca |
174 |
Q |
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| T |
13040572 |
ggtgacgattgaattccggtaagattcgaatcctgtaaatcaactcggaaaatgctccaccaaccgtca |
13040504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 13057993 - 13057926
Alignment:
| Q |
107 |
gtgatgattgaattccggtaagattagaatcctttaaatcggctcggaaaatgctccaccaaccgtca |
174 |
Q |
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|||| |||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
13057993 |
gtgaggattgaattccggtaagattcgaatcctgtaaatcaactcagaaaatgctccaccaaccgtca |
13057926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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