View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_5 (Length: 453)
Name: NF0500_low_5
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 18694627 - 18694283
Alignment:
| Q |
1 |
ctttagtttggtgtatggtcatgtagtctttgttgtttctaataacaatcattcttttattgactaatagtaataacctatgcacatggagaatagaatg |
100 |
Q |
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| T |
18694627 |
ctttagtttggtgtatggtcatgtagtctttgttgtttctaataacaatcattcttttattgactaata------acctatgcacatggagaatagaatg |
18694534 |
T |
|
| Q |
101 |
attgattcaagtgnnnnnnnnatcatgtttatatcttttttgcatctgtatttattgtcatgctttgatggttatccttttgacttttgatacaatgatt |
200 |
Q |
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| T |
18694533 |
attgattcaagtgttttttttatcatgtttatatcttttttgcatctgtatttattgtcatgctttgatggttatccttttgacttttgatacaatgatt |
18694434 |
T |
|
| Q |
201 |
gaatggaatgaatttgtggcttaaatttgaatcctgttttgttctgttataatttgaatagaatgattg-aatgaggttccttcatcagtttcttgtatg |
299 |
Q |
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| T |
18694433 |
gaatggaatgaatttgtggcttaaatttgaatcctgttttgttctgttataatt-------catggttgtgatgaggttccttcatcagtttcttgtatg |
18694341 |
T |
|
| Q |
300 |
atggattgagnnnnnnnngtgcattttgctttttcgtgtatctt-atggttgatgatg |
356 |
Q |
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| T |
18694340 |
atggattgagttttttttgtgcctcttgctttttcatgtatcttaatggttgatgatg |
18694283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 10803594 - 10803701
Alignment:
| Q |
136 |
ttttttgcatctgtatttattgtcatgctttgatggttatccttttgacttttgatacaatgattgaatggaatgaatttgtggcttaaatttgaatcct |
235 |
Q |
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||||||| |||||||||| |||||||| || ||||||||||| |||| |||||||||| |||| ||||||||||||||||||||||| |||| | |
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| T |
10803594 |
ttttttgtatctgtattttttgtcatgtttcgatggttatccatttg-------atacaatgatagaatagaatgaatttgtggcttaaattttaatctt |
10803686 |
T |
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| Q |
236 |
gttttgttctgttat |
250 |
Q |
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||| |||||| |||| |
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|
| T |
10803687 |
gttctgttctattat |
10803701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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