View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_6 (Length: 404)
Name: NF0500_low_6
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 45103538 - 45103775
Alignment:
| Q |
14 |
agaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataagtt |
113 |
Q |
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| T |
45103538 |
agaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataagtt |
45103637 |
T |
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| Q |
114 |
atactttatgnnnnnnnataaatcgtaaatcattatgatcaacnnnnnnnnnntgttatgtatcatttatattttctcataaaccttgttttaacttttt |
213 |
Q |
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| T |
45103638 |
atactttatgtttttttataaatcctaaatcattatgatcaacaaaaaaaaaatgttatgtatcatttatattttctcataaaccttgttttaacttttt |
45103737 |
T |
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| Q |
214 |
aactaactgtcattattacaataggaaatggttgatgt |
251 |
Q |
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| T |
45103738 |
aactaactgtcattattacaataggaaatggttgatgt |
45103775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 259 - 399
Target Start/End: Original strand, 34122524 - 34122664
Alignment:
| Q |
259 |
tatatgggaaagatgttgtaataagaatcatcaatagatgaacaataacaacaatgtccatcaatgtatagtgtcattcttagggtaacatatttttggt |
358 |
Q |
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| T |
34122524 |
tatatgggaaagatgttgtaataagaatcatcaatagatgaacaataacaacaatgtccatcaatgtatagtgtcattcttagggtaacatatttttggt |
34122623 |
T |
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| Q |
359 |
tgattgaaaaattcattttatttttataacaggagaaatat |
399 |
Q |
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| T |
34122624 |
tgattgaaaaattcattttatttttataacaggagaaatat |
34122664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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