View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0500_low_7 (Length: 403)
Name: NF0500_low_7
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 45103536 - 45103775
Alignment:
| Q |
12 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103536 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
45103635 |
T |
|
| Q |
112 |
ttatactttatgnnnnnnnataaatcgtaaatcattatgatcaac-nnnnnnnnntgttatgtatcatttatattttctcataaaccttgttttaacttt |
210 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103636 |
ttatactttatgtttttttataaatcctaaatcattatgatcaacaaaaaaaaaatgttatgtatcatttatattttctcataaaccttgttttaacttt |
45103735 |
T |
|
| Q |
211 |
ttaactaactgtcattattacaataggaaatggttgatgt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103736 |
ttaactaactgtcattattacaataggaaatggttgatgt |
45103775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 258 - 398
Target Start/End: Original strand, 34122524 - 34122664
Alignment:
| Q |
258 |
tatatgggaaagatgttgtaataagaatcatcaatagatgaacaataacaacaatgtccatcaatgtatagtgtcattcttagggtaacatatttttggt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122524 |
tatatgggaaagatgttgtaataagaatcatcaatagatgaacaataacaacaatgtccatcaatgtatagtgtcattcttagggtaacatatttttggt |
34122623 |
T |
|
| Q |
358 |
tgattgaaaaattcattttatttttataacaggagaaatat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122624 |
tgattgaaaaattcattttatttttataacaggagaaatat |
34122664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University