View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0500_low_9 (Length: 397)
Name: NF0500_low_9
Description: NF0500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0500_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 45103536 - 45103775
Alignment:
| Q |
5 |
acagaacagaacaccttttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
104 |
Q |
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| T |
45103536 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
45103635 |
T |
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| Q |
105 |
ttatactttatgnnnnnnnataaatcgtaaatcattatgatcaacnnnnnnnnnntgttatgtatcatttatattttctcataaaccttgttttaacttt |
204 |
Q |
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| T |
45103636 |
ttatactttatgtttttttataaatcctaaatcattatgatcaacaaaaaaaaaatgttatgtatcatttatattttctcataaaccttgttttaacttt |
45103735 |
T |
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| Q |
205 |
ttaactaactgtcattattacaataggaaatggttgatgt |
244 |
Q |
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| T |
45103736 |
ttaactaactgtcattattacaataggaaatggttgatgt |
45103775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 252 - 392
Target Start/End: Original strand, 34122524 - 34122664
Alignment:
| Q |
252 |
tatatgggaaagatgttgtaataagaatcatcaatagatgaacaataacaacaatgtccatcaatgtatagtgtcattcttagggtaacatatttttggt |
351 |
Q |
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| T |
34122524 |
tatatgggaaagatgttgtaataagaatcatcaatagatgaacaataacaacaatgtccatcaatgtatagtgtcattcttagggtaacatatttttggt |
34122623 |
T |
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| Q |
352 |
tgattgaaaaattcattttatttttataacaggagaaatat |
392 |
Q |
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| T |
34122624 |
tgattgaaaaattcattttatttttataacaggagaaatat |
34122664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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