View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0501-INSERTION-1 (Length: 278)
Name: NF0501-INSERTION-1
Description: NF0501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0501-INSERTION-1 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 55878658 - 55878928
Alignment:
| Q |
8 |
atatgttcattgattcattgaaaaccaatttatgttgatgatgcatggaatgtcatagaataaatgaaacaaa---ggcattcattttctaattctgatt |
104 |
Q |
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| T |
55878658 |
atatgttcattgattcattgaaaacgaatttatgttgctgatgcatggaatgtcatagaataaatgaaaaaaaaaaggcattcgttttctgattctgatg |
55878757 |
T |
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| Q |
105 |
atcttccatttgagtactgctatgacttaaggtgattatagtttatagcttgagagatttcttttctttttaatttcaaattaatcatcaagcactgatt |
204 |
Q |
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| T |
55878758 |
atcttccctttgagtactgctatgacataaggttataatagtttatagcttgagagatttcttttctttttaatttcaaattaatcatcaagcactaatt |
55878857 |
T |
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| Q |
205 |
cttggatatagttggagatatgttcgatatataattgaagtttgttaagttagttacaagttggatagtat |
275 |
Q |
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| T |
55878858 |
gttggatatagtatgagatatgttcgatatataattgaagtttgtaaagttagttacaggttggatagtat |
55878928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 2e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 9062627 - 9062428
Alignment:
| Q |
76 |
acaaaggcattcattttctaattctgattatcttccatttgagtactgctatgacttaaggtgattatagtttatagcttgagagatttcttttcttttt |
175 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9062627 |
acaaaggcattcattttctaattctgatgatcttccctttgagtactgctatgacttaaggtgattatagtttatagcttgaaagatttcttttcttttt |
9062528 |
T |
|
| Q |
176 |
aatttcaaattaat--catcaagcactgattcttggatatagttggagatatgttcgatatataattgaagtttgttaagttagttacaagttggatagt |
273 |
Q |
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| T |
9062527 |
aatttcaaattaatcacaccaagcactgattgttggatgtagttggagatattttcg--gtataattgaagtttgttaagttagttacaagttggatagt |
9062430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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