View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0501-INSERTION-4 (Length: 476)
Name: NF0501-INSERTION-4
Description: NF0501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0501-INSERTION-4 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 40511821 - 40511385
Alignment:
| Q |
6 |
ttgatcagccttgtctgtgtgaaaatgcaaacatttcttgatatat--ttctaaccaacttagaccgcaccatcaacatcttgtctttgaacctatgtcc |
103 |
Q |
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| T |
40511821 |
ttgatcagccttgtctgcgtgaaaatgcaaacatttcttgatatatatttctaaccaacttagaccgcaacatcaacaccttgtctttgaacctatgtcc |
40511722 |
T |
|
| Q |
104 |
ttgtccaggtttatatcaaggggctcgataattaattaattagctaatcttaattaaattagnnnnnnnn----acaaattagttgataaattacatatt |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40511721 |
ttgtccgggtttatatcaaggggctcgataattaattaattagctaatcttaattaaattagttttttttttttacaaattagttgataaattacatatt |
40511622 |
T |
|
| Q |
200 |
atgttttaaatttaaggatattattatcatttcaaaaataattttaattctcttcgcaatttgtatccacacatacaaaggaagaggagagcatacagtc |
299 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| |
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| T |
40511621 |
atgttttaaatttaaggatatttttgtcatttcaaaaataattttaattctcttcgcaatttgtatccaagcatacaaaggaagaggagagaaaacagtc |
40511522 |
T |
|
| Q |
300 |
tttgttaacatttcttctctctttctcttaaaataaacaatatataccaaacctactctatgcttcaacacgtcnnnnnnncgtattctttaacac---c |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| | |
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| T |
40511521 |
tttgttaacatttcttctctctttctcttaaaataaacaatatataccaaacctattatatgcttcaacacgtcttttttcggtattctttaacacctac |
40511422 |
T |
|
| Q |
397 |
tatattgagatggttctgaaataaaggaaaattggaa |
433 |
Q |
| |
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| T |
40511421 |
tatattgagatggttctgaaataaaggaaaattggaa |
40511385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 474
Target Start/End: Complemental strand, 40511859 - 40511824
Alignment:
| Q |
439 |
caaccacatttagacttattcataccacacccaatt |
474 |
Q |
| |
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| T |
40511859 |
caaccacatttagacttatccataccacacccaatt |
40511824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 16041153 - 16041193
Alignment:
| Q |
432 |
aattcagcaaccacatttagacttattcataccacacccaa |
472 |
Q |
| |
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|||| |||||||||||||||| |||| |||||||||||||| |
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| T |
16041153 |
aattaagcaaccacatttagatttatccataccacacccaa |
16041193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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