View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0501-INSERTION-5 (Length: 608)
Name: NF0501-INSERTION-5
Description: NF0501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0501-INSERTION-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 121 - 608
Target Start/End: Complemental strand, 38603470 - 38602988
Alignment:
| Q |
121 |
cactccttttcatcacaggttgtgtaatcttatatgaaattgtattaggtgacatgtaaatcttagttattgagagtaatgtgttcctaatactacgtct |
220 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38603470 |
cactccttttcatcacaggttgtgtaatctgatatgaaattgtattaggtgacatgtaaatcttagttattgagagtaatgtgttcctaatactacgtct |
38603371 |
T |
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| Q |
221 |
actgnnnnnnnnnnatggaagttttaattttcctaatctacttctttaataaagcttctctctcttcattatatcattattagcaatctttcacatgcat |
320 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38603370 |
actgttttttt---atggaagttttaattttcctaatctacttctttaataaagcttctctctcttcattatatcattattagcaatctttcacatgcat |
38603274 |
T |
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| Q |
321 |
tgatactatacttaccgtcccatgctcgtcgtcgacactacttttacataacagacaatcaaagtctctctggattggtcttccattgaagagacaaaaa |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38603273 |
tgatactatacttaccgtcccatgctcgtcgtcgacactacttttacataacagacaatcacagtctctctggattggtcttccattgaagagacaaaaa |
38603174 |
T |
|
| Q |
421 |
taacacaaacaagacaagtatatattttttagttggtcataagacaaaacataaatattaatcacttagacaatatagacatacatacataaaatatata |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38603173 |
taacacaaacaagacaagtatatattttttagttggtcataagacaaaacataaatattaatcacttagacaatatagacatacatacataaaatatata |
38603074 |
T |
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| Q |
521 |
gtagatcatttaaatattttgataaaaaagaaaattgataccannnnnnnnnnaatgggactaaatattttaagtttgganttgtaat |
608 |
Q |
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| T |
38603073 |
gtagatcatttaaatattttgataaaaaagaaaattgatacca--ttttttttaatgggactaaatgttttaagtttggacttgtaat |
38602988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 38603590 - 38603531
Alignment:
| Q |
1 |
atttgccaaccttaagccaaccacgtgtgaccacaaaacgacaacctcacttttactctc |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38603590 |
atttgccaaccttaagccaaccacgtgtgaccacaaaacgacaacctcacttttactctc |
38603531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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