View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0501-INSERTION-6 (Length: 593)
Name: NF0501-INSERTION-6
Description: NF0501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0501-INSERTION-6 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2070112 - 2069901
Alignment:
| Q |
1 |
gtggtatggtccaactagcaaccttggttgagcagatgtagcaaacataacaagttatccactgtcattgtcatctcatcaatctggaggtggaagatgc |
100 |
Q |
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| T |
2070112 |
gtggtatggttaaactagcgaccttggatgagtagatgtagcaagcatgacaagttatccattgtcaccgtcatctcatcaatttggaggtggaagatgc |
2070013 |
T |
|
| Q |
101 |
cactctttgagtcgaatagaggaagtggatgtaactctagttccttgaatacgatcgaaaattttaacatttctctccattcctggaacacagaggaaac |
200 |
Q |
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| T |
2070012 |
cactctttgagtcgaatagaggaagtggatgtaactctagttcccttaatacgaccaaaattcttaacatttctctccattcctagaacatagaggaaac |
2069913 |
T |
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| Q |
201 |
accacaaattag |
212 |
Q |
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|||||||||||| |
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| T |
2069912 |
accacaaattag |
2069901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 237 - 463
Target Start/End: Complemental strand, 2069845 - 2069616
Alignment:
| Q |
237 |
gacaaatgaaacctacatatggattttaaaatttg-atctaaattagggtgtagggaaaaaatttcgagctgagagaaaaactaaaaataagagaaacga |
335 |
Q |
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| T |
2069845 |
gacaaatgaaacctacgtatggattttaaaatttggatc-aaactagggcgtagggaaaaagtggcgagctgagagaaaaattgaaaataagagaaatga |
2069747 |
T |
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| Q |
336 |
gtactaacctcatgtttaaatcttca-------aaactgtgatggcttgaaggtgtatttgatgaaaaacgaaggattataggtggtttggtga-gtttt |
427 |
Q |
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| T |
2069746 |
gtactaacctcttgcttaaatcttcaaaatttcaaaatgtgatggattaaaggcgtatttgatgaaaaacgaaggattataggcggttttgtgaggtttt |
2069647 |
T |
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| Q |
428 |
ttgttttatttataagaggttttgaaaatgttaaaa |
463 |
Q |
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| T |
2069646 |
ttgtttt-----taagaggttttgaaaatgtaaaaa |
2069616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 536 - 593
Target Start/End: Complemental strand, 2069378 - 2069321
Alignment:
| Q |
536 |
aaacataaaacttatcatgatttacaaacatatgtgcattcctctcaatacaaaggcc |
593 |
Q |
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| T |
2069378 |
aaacagaaaacttatcatgatttacaaacatatgtgcattcctctcaataaaaaggcc |
2069321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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