View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0501_high_2 (Length: 245)

Name: NF0501_high_2
Description: NF0501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0501_high_2
NF0501_high_2
[»] chr1 (1 HSPs)
chr1 (1-240)||(38603248-38603482)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38603482 - 38603248
Alignment:
Q  1 aatatatatgatcactccttttcatcacaggttgtgtaatcttataataaattgtattaggtgacatgtaaatcttagttattgagagtaatgtgttcct 100  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38603482 aatatatattatcactccttttcatcacaggttgtgtaatctgatatgaaattgtattaggtgacatgtaaatcttagttattgagagtaatgtgttcct 38603383  T
Q  101 aatactacgtctactgnnnnnnnnnnnnatggaagttttaattttcctaatctacttctttaataaagcttctctctcttcattatatcattattagcaa 200  Q
    ||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38603382 aatactacgtctactgttttttt-----atggaagttttaattttcctaatctacttctttaataaagcttctctctcttcattatatcattattagcaa 38603288  T
Q  201 tctttcacatgcattgatactatacttaccgtcctatgct 240  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  38603287 tctttcacatgcattgatactatacttaccgtcccatgct 38603248  T

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