View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0501_low_5 (Length: 244)

Name: NF0501_low_5
Description: NF0501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0501_low_5
NF0501_low_5
[»] scaffold0428 (3 HSPs)
scaffold0428 (1-166)||(2315-2480)
scaffold0428 (18-112)||(15185-15278)
scaffold0428 (44-113)||(13827-13896)
[»] chr6 (9 HSPs)
chr6 (1-166)||(33258194-33258359)
chr6 (5-166)||(33414568-33414727)
chr6 (46-145)||(33384049-33384148)
chr6 (5-166)||(33269541-33269704)
chr6 (17-142)||(31564993-31565117)
chr6 (18-112)||(33278975-33279068)
chr6 (59-143)||(33395074-33395160)
chr6 (53-126)||(33406911-33406984)
chr6 (44-113)||(33280357-33280426)
[»] chr2 (1 HSPs)
chr2 (17-145)||(17447834-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2480 - 2315
Alignment:
Q  1 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2480 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 2381  T
Q  101 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2380 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 15185 - 15278
Alignment:
Q  18 aaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatt 112  Q
    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  15185 aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaatt 15278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 13827 - 13896
Alignment:
Q  44 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaattt 113  Q
    |||||||| ||||||| ||||| ||||||| ||| |||| || |||||| ||||||||||||||||||||    
T  13827 cgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaattt 13896  T

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Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 33258359 - 33258194
Alignment:
Q  1 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258359 cgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcag 33258260  T
Q  101 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258259 aagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 33414727 - 33414568
Alignment:
Q  5 agactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagt 104  Q
    ||||||||||  |||||||||||||||||||| || || |||| |||  |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  33414727 agactagcagctgaaggaagaatcggtacata-cattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagt 33414629  T
Q  105 gagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 166  Q
    |||||||| |||||||||||||| ||||||||||||||||| |||  || ||||||||||||    
T  33414628 gagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 33384148 - 33384049
Alignment:
Q  46 attcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 145  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

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Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 33269704 - 33269541
Alignment:
Q  5 agactagcagaagaaggaagaatcggtacatat---cactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcaga 101  Q
    ||||||||||  |||| ||||||||||||||||   || || | || ||  ||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  33269704 agactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttctaattgaagtgaactgtgaaaccgactttgttggcaga 33269605  T
Q  102 agtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 166  Q
    ||||||||||| ||| |||||||||| ||||||||||||||||| |||  || ||||||||||||    
T  33269604 agtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33269541  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 31564993 - 31565117
Alignment:
Q  17 gaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaag 116  Q
    |||||||||||||||||||| || || |||||||| |||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||    
T  31564993 gaaggaagaatcggtacata-cattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaag 31565091  T
Q  117 gagttggttgacgatcttgcaatgca 142  Q
    ||||||||| | ||||||||||||||    
T  31565092 gagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 33279068 - 33278975
Alignment:
Q  18 aaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatt 112  Q
    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  33279068 aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaatt 33278975  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 33395160 - 33395074
Alignment:
Q  59 tgttctaattgaagtgaacggtgaaaccgactttgttgg--cagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 143  Q
    |||||| |||||||||||| |||||||||||||||||||  ||||||||| | ||| |||||||||||||  |||||| ||||||||    
T  33395160 tgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 33406984 - 33406911
Alignment:
Q  53 cattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttg 126  Q
    |||| ||||| |||||| |||||||  |||||||||||||||||||||||||||| ||||  ||||||||||||    
T  33406984 cattagtgttataattgtagtgaactatgaaaccgactttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 33280426 - 33280357
Alignment:
Q  44 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaattt 113  Q
    |||||||| ||||||| ||||| ||||||| ||| |||| || |||||| ||||||||||||||||||||    
T  33280426 cgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaattt 33280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 17447834 - 17447961
Alignment:
Q  17 gaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaag 116  Q
    |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  |||||||||||||||||||||||| |||| ||| |||    
T  17447834 gaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaag 17447932  T
Q  117 gagttggttgacgatcttgcaatgcaagt 145  Q
    ||||||||||| |||||||||||||||||    
T  17447933 gagttggttgatgatcttgcaatgcaagt 17447961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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