View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0502_high_4 (Length: 267)

Name: NF0502_high_4
Description: NF0502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0502_high_4
NF0502_high_4
[»] chr4 (1 HSPs)
chr4 (1-260)||(47625031-47625290)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 47625031 - 47625290
Alignment:
Q  1 tcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaataatctagcagcttaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47625031 tcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaataatctagcagcttaaaca 47625130  T
Q  101 gctatagtaaaatcatgtcatgccactgagagtacagagtcatctcttaatattgaaggtaattggtaccttggagagctccagtgaaggaggaataact 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47625131 gctatagtaaaatcatgtcatgccactgacagtacagagtcatctcttaatattgaaggtaattgttaccttggagagctccagtgaaggaggaataact 47625230  T
Q  201 atagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtgctg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47625231 atagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtgctg 47625290  T

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