View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0502_high_9 (Length: 235)
Name: NF0502_high_9
Description: NF0502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0502_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47625026 - 47624806
Alignment:
| Q |
1 |
aatatcgttgtttggggtattgcaatgttgaaaacaaaacaaactatgtcattgccatgacatttcatatctttactataaagtttcatgtaatggttta |
100 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |
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| T |
47625026 |
aatatcgttttttggggtattgcaatgtggaaaacaaaacaaactatgtcatgaccatgacatttcataactgtactataaagtttcatgcaatggttta |
47624927 |
T |
|
| Q |
101 |
tacatgtgctctctggtctcctttttcaacaggttcttgtcaaagatatgaagataaaattactcaatgggatgaaggatttgctagatagtggtacgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47624926 |
tacatgtgctctctggtctcctttttcaacaggttcttgtcaaagatatgaagataaaattgctcaatgggatgaaggatttgctagatagtggtacgaa |
47624827 |
T |
|
| Q |
201 |
gattcaggctgttcaagcatg |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
47624826 |
gattcaggctgttcaagcatg |
47624806 |
T |
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