View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0502_low_2 (Length: 599)

Name: NF0502_low_2
Description: NF0502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0502_low_2
NF0502_low_2
[»] chr8 (14 HSPs)
chr8 (217-381)||(17683697-17683861)
chr8 (217-381)||(17664541-17664705)
chr8 (217-362)||(39837482-39837627)
chr8 (215-351)||(4839713-4839849)
chr8 (217-352)||(17973565-17973700)
chr8 (216-346)||(39845541-39845671)
chr8 (217-362)||(30938282-30938427)
chr8 (217-352)||(25579742-25579877)
chr8 (217-362)||(1406993-1407138)
chr8 (217-345)||(26873541-26873669)
chr8 (217-345)||(26875991-26876119)
chr8 (478-529)||(17664393-17664444)
chr8 (478-529)||(17683549-17683600)
chr8 (217-311)||(4582204-4582298)
[»] chr2 (24 HSPs)
chr2 (215-381)||(20372214-20372380)
chr2 (217-381)||(20621518-20621682)
chr2 (217-362)||(14582925-14583070)
chr2 (217-362)||(15944477-15944622)
chr2 (217-362)||(15952992-15953137)
chr2 (217-362)||(35138593-35138738)
chr2 (217-362)||(35146929-35147074)
chr2 (217-362)||(41233764-41233909)
chr2 (217-362)||(38168277-38168422)
chr2 (217-362)||(42565849-42565994)
chr2 (217-362)||(42574473-42574618)
chr2 (245-362)||(35037884-35038001)
chr2 (217-326)||(44372705-44372814)
chr2 (217-326)||(44388616-44388725)
chr2 (217-311)||(17687369-17687463)
chr2 (217-328)||(25483601-25483712)
chr2 (217-328)||(25491207-25491318)
chr2 (478-529)||(20621788-20621839)
chr2 (217-342)||(35303737-35303862)
chr2 (216-311)||(27606616-27606710)
chr2 (217-311)||(24285696-24285790)
chr2 (217-311)||(42249426-42249520)
chr2 (266-343)||(18989312-18989389)
chr2 (217-311)||(34070575-34070669)
[»] chr5 (20 HSPs)
chr5 (23-217)||(22042553-22042746)
chr5 (217-363)||(29186197-29186343)
chr5 (216-352)||(20398565-20398701)
chr5 (217-352)||(20372843-20372978)
chr5 (217-362)||(1728079-1728224)
chr5 (216-362)||(43597966-43598112)
chr5 (216-362)||(43603458-43603604)
chr5 (216-362)||(43608950-43609096)
chr5 (217-362)||(24956766-24956911)
chr5 (217-362)||(24965229-24965374)
chr5 (217-352)||(23350006-23350141)
chr5 (216-362)||(28843939-28844085)
chr5 (217-362)||(28852550-28852695)
chr5 (217-349)||(31410890-31411022)
chr5 (217-344)||(31421789-31421916)
chr5 (217-328)||(19223555-19223666)
chr5 (296-342)||(17638318-17638364)
chr5 (296-342)||(23028007-23028053)
chr5 (295-341)||(23037923-23037969)
chr5 (483-529)||(19223811-19223857)
[»] scaffold0156 (1 HSPs)
scaffold0156 (217-352)||(35286-35421)
[»] chr7 (12 HSPs)
chr7 (217-362)||(10439937-10440082)
chr7 (217-362)||(4952317-4952462)
chr7 (217-362)||(13831500-13831645)
chr7 (217-362)||(13839531-13839676)
chr7 (217-362)||(18304312-18304457)
chr7 (217-362)||(12978455-12978600)
chr7 (217-342)||(21662962-21663088)
chr7 (217-311)||(30244775-30244869)
chr7 (217-278)||(4941581-4941642)
chr7 (217-311)||(30255413-30255506)
chr7 (288-343)||(1955691-1955746)
chr7 (217-311)||(30245568-30245662)
[»] chr4 (14 HSPs)
chr4 (217-362)||(27343611-27343756)
chr4 (217-362)||(4523600-4523745)
chr4 (217-362)||(12996476-12996621)
chr4 (217-352)||(8094212-8094347)
chr4 (217-352)||(8103018-8103153)
chr4 (217-363)||(21532224-21532369)
chr4 (217-345)||(52295604-52295732)
chr4 (217-342)||(12428418-12428543)
chr4 (217-343)||(33188766-33188891)
chr4 (217-290)||(10638328-10638400)
chr4 (317-362)||(10638406-10638451)
chr4 (272-311)||(12402907-12402946)
chr4 (217-342)||(3424331-3424454)
chr4 (296-341)||(25249599-25249644)
[»] chr3 (23 HSPs)
chr3 (217-362)||(8154564-8154709)
chr3 (216-362)||(50824351-50824497)
chr3 (216-362)||(50851363-50851509)
chr3 (217-362)||(41006556-41006701)
chr3 (217-362)||(41015336-41015481)
chr3 (217-352)||(14538534-14538670)
chr3 (216-363)||(28470137-28470283)
chr3 (217-362)||(27341254-27341400)
chr3 (217-362)||(2211239-2211384)
chr3 (217-352)||(9525364-9525499)
chr3 (217-352)||(9555038-9555173)
chr3 (217-342)||(17933655-17933780)
chr3 (217-342)||(17919199-17919324)
chr3 (219-343)||(43470492-43470615)
chr3 (217-342)||(16816145-16816268)
chr3 (217-281)||(17628265-17628329)
chr3 (217-311)||(21186747-21186841)
chr3 (221-311)||(18349560-18349650)
chr3 (217-312)||(18039011-18039106)
chr3 (217-311)||(30447-30541)
chr3 (217-311)||(8197667-8197761)
chr3 (296-343)||(31276593-31276640)
chr3 (302-343)||(16288692-16288733)
[»] chr1 (14 HSPs)
chr1 (217-362)||(3432810-3432955)
chr1 (217-362)||(31539954-31540099)
chr1 (217-362)||(31548523-31548668)
chr1 (217-352)||(32137684-32137819)
chr1 (217-362)||(35103984-35104129)
chr1 (217-352)||(41746622-41746758)
chr1 (217-342)||(29221429-29221553)
chr1 (217-342)||(44320132-44320257)
chr1 (290-342)||(28457629-28457681)
chr1 (259-341)||(51058330-51058411)
chr1 (217-311)||(21498869-21498963)
chr1 (289-342)||(8241438-8241491)
chr1 (296-340)||(13462775-13462819)
chr1 (296-341)||(22460026-22460071)
[»] chr6 (17 HSPs)
chr6 (217-352)||(33298085-33298219)
chr6 (217-346)||(15391547-15391676)
chr6 (216-362)||(5004060-5004206)
chr6 (217-352)||(13825703-13825838)
chr6 (217-352)||(30824459-30824594)
chr6 (216-362)||(35091596-35091742)
chr6 (216-352)||(25550294-25550430)
chr6 (217-362)||(11279837-11279982)
chr6 (217-345)||(5994699-5994827)
chr6 (219-362)||(25991852-25991995)
chr6 (217-362)||(25506461-25506606)
chr6 (217-362)||(23925335-23925481)
chr6 (276-353)||(26526631-26526708)
chr6 (217-308)||(13490193-13490284)
chr6 (216-269)||(5489132-5489185)
chr6 (217-309)||(11053702-11053794)
chr6 (284-343)||(14894939-14894998)
[»] scaffold0111 (1 HSPs)
scaffold0111 (217-362)||(33035-33180)
[»] scaffold0209 (1 HSPs)
scaffold0209 (217-362)||(4-149)
[»] scaffold0083 (1 HSPs)
scaffold0083 (217-345)||(15813-15941)
[»] scaffold0002 (1 HSPs)
scaffold0002 (217-352)||(121228-121363)
[»] scaffold0497 (1 HSPs)
scaffold0497 (217-343)||(10993-11119)
[»] scaffold0632 (1 HSPs)
scaffold0632 (217-345)||(4390-4518)
[»] scaffold0016 (1 HSPs)
scaffold0016 (217-352)||(23464-23600)
[»] scaffold0173 (1 HSPs)
scaffold0173 (217-352)||(859-994)
[»] scaffold0039 (1 HSPs)
scaffold0039 (217-328)||(40787-40898)
[»] scaffold0431 (1 HSPs)
scaffold0431 (217-342)||(139-264)
[»] scaffold0170 (1 HSPs)
scaffold0170 (217-343)||(7129-7255)
[»] scaffold0222 (1 HSPs)
scaffold0222 (217-342)||(20422-20547)
[»] scaffold0027 (2 HSPs)
scaffold0027 (285-363)||(65622-65701)
scaffold0027 (489-529)||(65470-65510)
[»] scaffold0315 (1 HSPs)
scaffold0315 (287-343)||(10595-10651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (217-312)||(192528-192623)
[»] scaffold0290 (1 HSPs)
scaffold0290 (266-343)||(15760-15837)
[»] scaffold0991 (1 HSPs)
scaffold0991 (217-310)||(345-438)
[»] scaffold0048 (2 HSPs)
scaffold0048 (317-350)||(7587-7620)
scaffold0048 (216-289)||(7622-7695)
[»] scaffold0044 (2 HSPs)
scaffold0044 (217-310)||(81758-81851)
scaffold0044 (217-311)||(65509-65603)
[»] scaffold0007 (1 HSPs)
scaffold0007 (296-343)||(61371-61418)
[»] scaffold0863 (1 HSPs)
scaffold0863 (217-311)||(343-437)
[»] scaffold1380 (1 HSPs)
scaffold1380 (302-343)||(556-597)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 217 - 381
Target Start/End: Complemental strand, 17683861 - 17683697
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 381  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  17683761 agaagttactttgaagtacctcattttttattccgagtcggacccttctctttcccattattttc 17683697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 217 - 381
Target Start/End: Complemental strand, 17664705 - 17664541
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||    
T  17664705 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgacaa 17664606  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 381  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  17664605 agaagttactttgaagtacctcattttttattccgagtcggacccttctctttcccattattttc 17664541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 39837627 - 39837482
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  39837627 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39837528  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  39837527 agaggttactttgaagtacctcattttttattccgagtcggaccct 39837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 215 - 351
Target Start/End: Complemental strand, 4839849 - 4839713
Alignment:
Q  215 tatgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac 314  Q
    ||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4839849 tatgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgac 4839750  T
Q  315 aaagaggttactttgaagtacctcattttttattccg 351  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  4839749 aaagaagttactttgaagtacctcatttttgattccg 4839713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 217 - 352
Target Start/End: Original strand, 17973565 - 17973700
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  17973665 agaggttactttgaagtacctcattttttattccga 17973700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 216 - 346
Target Start/End: Complemental strand, 39845671 - 39845541
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  39845671 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 39845572  T
Q  316 aagaggttactttgaagtacctcatttttta 346  Q
    |||||||||||||||||||||||||||||||    
T  39845571 aagaggttactttgaagtacctcatttttta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 30938282 - 30938427
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  30938382 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 30938427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 25579877 - 25579742
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    |||||||||  ||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  25579777 agaggttactttgaagtacctcattttttattccga 25579742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 1407138 - 1406993
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  1407038 agaggttactttgaagtacctcattttttattccgagtcggaccct 1406993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 26873669 - 26873541
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||    
T  26873669 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgacaa 26873570  T
Q  317 agaggttactttgaagtacctcatttttt 345  Q
    |||||||||||| |||||||| |||||||    
T  26873569 agaggttactttaaagtaccttatttttt 26873541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 26876119 - 26875991
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||    
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  317 agaggttactttgaagtacctcatttttt 345  Q
    |||||||||||| || |||||||||||||    
T  26876019 agaggttactttaaaatacctcatttttt 26875991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 17664444 - 17664393
Alignment:
Q  478 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 529  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17664444 ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc 17664393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 17683600 - 17683549
Alignment:
Q  478 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 529  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17683600 ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc 17683549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 4582204 - 4582298
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    |||||||||| |||||||||||||||||||||||  || |  ||||| ||| || |||||||  ||| ||| | |||| ||| ||||||||||||    
T  4582204 tgtcataccttaaattttgaccacttttctctatttttacacattttgttcatacttttaaaaccggaaatgtccgtcattttagacgaaatttc 4582298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 215 - 381
Target Start/End: Complemental strand, 20372380 - 20372214
Alignment:
Q  215 tatgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac 314  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  20372380 tatgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgac 20372281  T
Q  315 aaagaggttactttgaagtacctca-ttttttattccgaatcagacccttctctttcccattattttc 381  Q
    ||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  20372280 aaa-aggttactttgaagtacctcatttttttattccgagtcggacccttctctttcccattattttc 20372214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 217 - 381
Target Start/End: Original strand, 20621518 - 20621682
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  20621518 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgacaa 20621617  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 381  Q
    ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  20621618 agatgttactttgaagtacctcattttttattctgagtcagacccttctctttcccattattttc 20621682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 14582925 - 14583070
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  14583025 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 14583070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 15944622 - 15944477
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  15944622 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15944523  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  15944522 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 15944477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 15953137 - 15952992
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  15953037 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 15952992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 35138593 - 35138738
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  35138593 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35138692  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35138693 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35138738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 35146929 - 35147074
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  35146929 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35147028  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35147029 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35147074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 41233909 - 41233764
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41233909 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41233810  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41233809 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41233764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 38168422 - 38168277
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||  |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  38168322 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 38168277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 42565994 - 42565849
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  42565994 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42565895  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  42565894 agaggttactttgaagtacctcattttttattccgagtcggaccct 42565849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 42574618 - 42574473
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42574519  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  42574518 agaggttactttgaagtacctcattttttattccgagtcggaccct 42574473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 35037884 - 35038001
Alignment:
Q  245 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 344  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  345 tattccgaatcagaccct 362  Q
    |||||||| |||| ||||    
T  35037984 tattccgagtcaggccct 35038001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 44372705 - 44372814
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44372804  T
Q  317 agaggttact 326  Q
    ||||||||||    
T  44372805 agaggttact 44372814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 44388616 - 44388725
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44388715  T
Q  317 agaggttact 326  Q
    ||||||||||    
T  44388716 agaggttact 44388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 17687463 - 17687369
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 17687369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 217 - 328
Target Start/End: Original strand, 25483601 - 25483712
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||     
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  317 agaggttacttt 328  Q
    ||||||||||||    
T  25483701 agaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 217 - 328
Target Start/End: Original strand, 25491207 - 25491318
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||     
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  317 agaggttacttt 328  Q
    ||||||||||||    
T  25491307 agaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 20621788 - 20621839
Alignment:
Q  478 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621788 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 20621839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 35303737 - 35303862
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||| | ||||||||    || ||  |||||||| |||||| |||| |  ||| ||||||||||||||||||||||||  ||     
T  35303737 tgtcataccccaaattttgactatttttctctgattttaccccttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcag 35303836  T
Q  317 agaggttactttgaagtacctcattt 342  Q
    |||||||| |||||||||||||||||    
T  35303837 agaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 216 - 311
Target Start/End: Complemental strand, 27606710 - 27606616
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    |||||||||  ||||||||||| ||||||||||||  ||  | |||||||||||| |||||||| |||||||||| ||||| ||||||||||||||    
T  27606710 atgtcatactccaaattttgactacttttctctatttttatcaattttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttc 27606616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 24285696 - 24285790
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| |||||||||||||||||||| |||  || |  ||||| |||||| |||||||   || ||||| |||||||| ||||||||||||    
T  24285696 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaactggaaatttccgtcgtttaagacgaaatttc 24285790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 42249520 - 42249426
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||  |||||| ||||||| |||  ||| | |||||||| ||||||||||||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaatcgaaaatgtccgtcgttttagacgaaatttc 42249426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 18989389 - 18989312
Alignment:
Q  266 tcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    |||| ||||||||| |||||||||| ||||  |||||||||||| |   | |||||||||||| ||||||||||||||    
T  18989389 tcgtctttttaaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 34070669 - 34070575
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| |||||||||| |||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||| |||||||    
T  34070669 tgtcataccccaaattttgatcacttttctctatttttacacattttgttcgtacttttaaaaccggtaatgtccgtcgttttagacaaaatttc 34070575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 22042553 - 22042746
Alignment:
Q  23 tgtgcacattgaagaagtataacaacactgcagagtagtaaaacaaaataaaattagcagttaggaaaactgaaaatatagaatacctgatatggaagat 122  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |    |  ||||||||||||| |||||||||||||||||||||||||||||||    
T  22042553 tgtgcacattgaagaagtataacaacagtgcagagtagtataacaacagtgcag-agcagttaggaaagctgaaaatatagaatacctgatatggaagat 22042651  T
Q  123 gtacagtttcaaaacctcccagaacttgtcttttaagcacatcacgatatccagccatttcaagtggaaagagtagttaaagatgatgtagttat 217  Q
    ||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22042652 gtacagtttcaaaacctcctagaatttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgttaaagatgatgtagttat 22042746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 217 - 363
Target Start/End: Complemental strand, 29186343 - 29186197
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccctt 363  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||    
T  29186243 agaggttactttgaagtgcctcattttttattccgagtcggaccctt 29186197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 20398701 - 20398565
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20398701 atgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 20398602  T
Q  316 aagaggttactttgaagtacctcattttttattccga 352  Q
     ||||||||||||||||||||||||||||||||||||    
T  20398601 gagaggttactttgaagtacctcattttttattccga 20398565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 20372978 - 20372843
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  20372978 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20372879  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  20372878 agaggttactttgaagtacctcattttttattccga 20372843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 1728224 - 1728079
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||    
T  1728224 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttgacaa 1728125  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  1728124 agaggttactttgaagtacctcattttttattccgagtcggaccct 1728079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 43598112 - 43597966
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43598112 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43598013  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43598012 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43597966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 43603604 - 43603458
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43603604 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43603505  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43603504 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43603458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 43609096 - 43608950
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43609096 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43608997  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43608996 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43608950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 24956911 - 24956766
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  24956911 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24956812  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  24956811 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 24956766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 24965374 - 24965229
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  24965374 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24965275  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  24965274 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 24965229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 23350141 - 23350006
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||| ||||||||||  || || |||||||||||||||||||||||||||||| ||||| ||||||||||||||||  |||    
T  23350141 tgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggcaa 23350042  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  23350041 agaggttactttgaagtacctcattttttattccga 23350006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 28843939 - 28844085
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   ||    
T  28843939 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 28844038  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  28844039 aagaggttactttgaagtacctcattttttattccgagtcggaccct 28844085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 28852550 - 28852695
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  28852550 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28852649  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  28852650 agaggttactttgaagtacctcattttttattccgagtcggaccct 28852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 217 - 349
Target Start/End: Original strand, 31410890 - 31411022
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||| ||||||||| ||  || ||||||||||||||||||||||  |||||||||||||||| | |||||||||| ||||    
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  317 agaggttactttgaagtacctcattttttattc 349  Q
    |||||||||||||||||||||||||||||||||    
T  31410990 agaggttactttgaagtacctcattttttattc 31411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 217 - 344
Target Start/End: Original strand, 31421789 - 31421916
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    |||||||||  ||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||    
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  317 agaggttactttgaagtacctcattttt 344  Q
    ||| ||||||||||||||||||||||||    
T  31421889 agatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 217 - 328
Target Start/End: Original strand, 19223555 - 19223666
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||| ||||||||||||| ||||| || |||     
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  317 agaggttacttt 328  Q
    ||||||||||||    
T  19223655 agaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 17638318 - 17638364
Alignment:
Q  296 tttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 342  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  17638318 tttcaaacgaaatttcgacagagaggttactttgaagtacctcattt 17638364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  296 tttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 342  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  295 gtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 341  Q
    |||||||||||||||||  || |||||||||||||||||||||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 529
Target Start/End: Original strand, 19223811 - 19223857
Alignment:
Q  483 caatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 529  Q
    |||||||||||||||||||||| |||||| |||  ||||||||||||    
T  19223811 caatgttgtcaataagtccgaaagttttcagcaagggtccaaatttc 19223857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 35421 - 35286
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 35322  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  35321 agaggttactttgaagtacctcattttttattccga 35286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 10439937 - 10440082
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  10439937 tgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 10440036  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||    
T  10440037 agaggttactttaaagtacctcattttttattccgagtcagaccct 10440082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 4952462 - 4952317
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    |||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||    
T  4952462 tgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 4952363  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  4952362 agaggttactttgaagtacctcattttttattccgagtcggaccct 4952317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 13831500 - 13831645
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    |||||||||  |||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13831500 tgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13831599  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  13831600 agaggttactttgaagtacctcattttttattccgagtcggaccct 13831645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 13839531 - 13839676
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13839531 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13839630  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  13839631 agaggttactttgaagtacctcattttttattccgagtcggaccct 13839676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 18304457 - 18304312
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 18304358  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||    
T  18304357 agaggttactttgaagtacctcattttttatttcgagtcggaccct 18304312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 12978455 - 12978600
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  12978555 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 12978600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 21663088 - 21662962
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtattttt-aaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    ||||||||| |||||||||| ||||||| ||| |  || || ||||||||||||||||| |||| || || | |||||||||| ||||||||||||||||    
T  21663088 tgtcataccccaaattttgatcacttttatctgtttttacccattttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttcaaca 21662989  T
Q  316 aagaggttactttgaagtacctcattt 342  Q
      |||||||||||||||||||||||||    
T  21662988 gggaggttactttgaagtacctcattt 21662962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 30244775 - 30244869
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||||||||||||||||||||||||||||  ||  | ||||||||||||||||||||||| ||||||||||| ||||||| || ||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccattttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttc 30244869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 4941642 - 4941581
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaa 278  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 4941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 30255413 - 30255506
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||||||| | ||| | ||||||||| ||||||| || ||||||    
T  30255413 tgtcatacc-caaattttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttc 30255506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  288 tttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    |||||||||||||||| |||||||  || |||||||||||||||| ||||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 30245568 - 30245662
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    |||||||||  || ||||||||||||||||||||  ||  | ||||||||||||||||| | ||| | ||||||||| ||||||| || ||||||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttc 30245662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 27343756 - 27343611
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  27343656 agaggttactttgaagtacctcattttttattccgagtcggaccct 27343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 4523745 - 4523600
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 4523646  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  4523645 agaggttactttgaagtacctcattttttattccgagtcggaccct 4523600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 12996476 - 12996621
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||   |     
T  12996476 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggtag 12996575  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||    
T  12996576 agaggttactttgaagtacctcattttttattccgagtcagtccct 12996621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 8094347 - 8094212
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  8094347 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8094248  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    |||||||||||||||||||||||||||| |||||||    
T  8094247 agaggttactttgaagtacctcatttttgattccga 8094212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 8103153 - 8103018
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    |||||||||||||||||||||||||||| |||||||    
T  8103053 agaggttactttgaagtacctcatttttgattccga 8103018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 217 - 363
Target Start/End: Complemental strand, 21532369 - 21532224
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgacaa 21532270  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccctt 363  Q
    | || |||||||||||||||||||||||||||| || || |||||||    
T  21532269 a-agattactttgaagtacctcattttttattctgagtcggaccctt 21532224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 52295604 - 52295732
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||     
T  52295604 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcag 52295703  T
Q  317 agaggttactttgaagtacctcatttttt 345  Q
    |||| ||||||||||||||||||||||||    
T  52295704 agagattactttgaagtacctcatttttt 52295732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 12428543 - 12428418
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||||| | | |||||||||  |||||||||||||||| || |    
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 12428444  T
Q  317 agaggttactttgaagtacctcattt 342  Q
    |||| |||||||||||||||||||||    
T  12428443 agagtttactttgaagtacctcattt 12428418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 33188766 - 33188891
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||| |||||| |||||  ||  |  ||||||| ||||||||||||  | ||||||||||||||||||||||||||||| |||    
T  33188766 tgtcataccccaaattttgacaactttt-tctatttttatcctttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttcagcaa 33188864  T
Q  317 agaggttactttgaagtacctcatttt 343  Q
      ||||||||||||| |||||||||||    
T  33188865 gaaggttactttgaattacctcatttt 33188891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 10638328 - 10638400
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaatttt 290  Q
    ||||||||| ||||||||||||||||||||||||  || || |||||||||||| |||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgta-ttttaaagtcgggaatttt 10638400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 10638406 - 10638451
Alignment:
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  10638406 agaggttactttgaagtacctcattttttattccgagtcggaccct 10638451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 12402907 - 12402946
Alignment:
Q  272 ttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttc 12402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 3424331 - 3424454
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||| || |||||||||   || ||  |||||||| || ||| |||| |  |||  ||||||||| |||||||||||||  ||     
T  3424331 tgtcataccccaaattttgatcatttttctctaattttaccccttttattcttactttaaaagccaagaaagttcgtcgttccagacgaaatttcggca- 3424429  T
Q  317 agaggttactttgaagtacctcattt 342  Q
     |||||||||||||||||||||||||    
T  3424430 -gaggttactttgaagtacctcattt 3424454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 25249644 - 25249599
Alignment:
Q  296 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 341  Q
    ||||| ||||||||||||||  |||||||||||| |||||||||||    
T  25249644 tttcaaacgaaatttcaacagggaggttactttggagtacctcatt 25249599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 8154709 - 8154564
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  8154709 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 8154610  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  8154609 agaggttactttgaagtacctcattttttattccgagtcggaccct 8154564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 50824351 - 50824497
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  50824351 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggca 50824450  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     |||||||||||||||||||||||||||||||||||| || ||||||    
T  50824451 gagaggttactttgaagtacctcattttttattccgagtcggaccct 50824497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 50851509 - 50851363
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  50851509 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggca 50851410  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     |||||||||||||||||||||||||||||||||||| || ||||||    
T  50851409 gagaggttactttgaagtacctcattttttattccgagtcggaccct 50851363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 41006556 - 41006701
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41006556 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41006655  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41006656 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41006701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 41015336 - 41015481
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41015336 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41015435  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41015436 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41015481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 14538670 - 14538534
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac-a 315  Q
    ||||||||| |||||||||||||||||||||||| |||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||  | |    
T  14538670 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 14538571  T
Q  316 aagaggttactttgaagtacctcattttttattccga 352  Q
    |||||||||||||||||||||||||||||||||||||    
T  14538570 aagaggttactttgaagtacctcattttttattccga 14538534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 216 - 363
Target Start/End: Complemental strand, 28470283 - 28470137
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||    
T  28470283 atgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgaca 28470184  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccctt 363  Q
    || || ||||| |||||||||||||||||||||| || || |||||||    
T  28470183 aa-agattactatgaagtacctcattttttattctgagtcggaccctt 28470137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 27341400 - 27341254
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| |||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||     
T  27341400 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 27341301  T
Q  317 agaggttactttgaagtacctcatt-ttttattccgaatcagaccct 362  Q
    | ||||||||||||||||||||||| ||||||||||| |||| ||||    
T  27341300 aaaggttactttgaagtacctcatttttttattccgagtcaggccct 27341254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 2211239 - 2211384
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    |||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  |||    
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaa 2211338  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    ||||| || ||| || |||||||||||||||||||| |||| ||||    
T  2211339 agagggtattttaaaatacctcattttttattccgagtcaggccct 2211384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 9525499 - 9525364
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||  ||     
T  9525499 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9525400  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    | |||||||||| || ||||||||||||||||||||    
T  9525399 aaaggttactttaaaatacctcattttttattccga 9525364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 9555173 - 9555038
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||| ||||||||||||| ||| || |||||| |||||||||||||||||||||||||||| |||| ||||||||||||  ||     
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9555074  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    | |||||||||| || ||||||||||||||||||||    
T  9555073 aaaggttactttaaaatacctcattttttattccga 9555038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 17933655 - 17933780
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||| ||||||||||  || || ||||||||||||||||||||||||| |||||||||  ||||||||||||||||  |      
T  17933655 tgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcgg 17933754  T
Q  317 agaggttactttgaagtacctcattt 342  Q
    ||||||||||||||||||||||||||    
T  17933755 agaggttactttgaagtacctcattt 17933780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 17919199 - 17919324
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||||||||||| ||  |||||||||  ||||||||||||||||  |      
T  17919199 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcgg 17919298  T
Q  317 agaggttactttgaagtacctcattt 342  Q
    |||||||||||| |||||||||||||    
T  17919299 agaggttactttaaagtacctcattt 17919324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 43470615 - 43470492
Alignment:
Q  219 tcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaag 318  Q
    ||||||| ||||||||||| |||||| |||||  || ||  |||||||||||||||||||| || |||||||  |||||||||||||||||||  || ||    
T  43470615 tcataccccaaattttgactactttt-tctatttttaccctttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagag 43470517  T
Q  319 aggttactttgaagtacctcatttt 343  Q
    |||||||||||||||||||||||||    
T  43470516 aggttactttgaagtacctcatttt 43470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 16816268 - 16816145
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||||||||||||||||||| ||| |||||||||  |||||||||||||||  ||      
T  16816268 tgtcatacc-caaattttgaccacttttctctatttttactcattttattcgtatttttaaagccggaaattttcgttatttcagacgaaattttgacgg 16816170  T
Q  317 agaggttactttgaagtacctcattt 342  Q
    ||||| ||||||||||||||||||||    
T  16816169 agagg-tactttgaagtacctcattt 16816145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 17628265 - 17628329
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtc 281  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 17628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 21186747 - 21186841
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| |||||||||||||||||| ||| |  ||  | |||||||||||| |||||||| || |||||||||| |||||| ||||||||||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccattttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttc 21186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 311
Target Start/End: Original strand, 18349560 - 18349650
Alignment:
Q  221 atacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||| ||||||||||| ||||||||||||  || |  |||||||||||| ||||||| |||| ||| | |||||||| ||||||||||||    
T  18349560 ataccccaaattttgacaacttttctctatttttacacattttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttc 18349650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 18039011 - 18039106
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttca 312  Q
    ||||||||| |||||||||||||||||||||  |  || || |||||||||||||||| || | || |||   |||| ||||||||||||||||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgttgtttcagacgaaatttca 18039106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 30541 - 30447
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| || ||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacattttgtttgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 30447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 8197761 - 8197667
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||| |||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacaaaatttc 8197667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 31276593 - 31276640
Alignment:
Q  296 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||||||    
T  31276593 tttcaaacgaaatttcgacaagaaggttactttgaagtacctcatttt 31276640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  302 acgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 3432955 - 3432810
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  3432955 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 3432856  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  3432855 agaggttactttgaagtacctcattttttattccgagtcggaccct 3432810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 31539954 - 31540099
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31540053  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  31540054 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 31540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 31548523 - 31548668
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31548523 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31548622  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  31548623 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 31548668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 32137819 - 32137684
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    |||| |||| |||||||||| ||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    | | ||||||||||||||||||||||||||||||||    
T  32137719 ataagttactttgaagtacctcattttttattccga 32137684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 35104129 - 35103984
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||    
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35104029 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35103984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 41746758 - 41746622
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac-a 315  Q
    ||||||| | |||||||||||||||||| ||||| |||  | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||  | |    
T  41746758 tgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaa 41746659  T
Q  316 aagaggttactttgaagtacctcattttttattccga 352  Q
    |||||||||||||||||||||||||||||||||||||    
T  41746658 aagaggttactttgaagtacctcattttttattccga 41746622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 29221553 - 29221429
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||| ||||||||||||  || || ||||||||||||||||||||||||| ||||||||   ||||||||||||||||  ||     
T  29221553 tgtcataccccaaattttgactacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggcag 29221454  T
Q  317 agaggttactttgaagtacctcattt 342  Q
    ||||| || |||||| ||||||||||    
T  29221453 agagg-tattttgaaatacctcattt 29221429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 44320257 - 44320132
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||  |  || || |||||||||||||||| || | || |||   ||||||||||||||||||||||| ||     
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcag 44320158  T
Q  317 agaggttactttgaagtacctcattt 342  Q
     ||||||||||  |||||||||||||    
T  44320157 ggaggttacttgaaagtacctcattt 44320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 28457629 - 28457681
Alignment:
Q  290 tcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 342  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  28457629 tcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacatcattt 28457681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 51058411 - 51058330
Alignment:
Q  259 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 341  Q
    |||||||||||||||||||||  |||||||||||| |||||| ||||||||||| || | ||| || |||||| |||||||||    
T  51058411 attttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttcagcagaaagg-tattttgaaatacctcatt 51058330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 21498963 - 21498869
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||  |||||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 21498869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 8241491 - 8241438
Alignment:
Q  289 ttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 342  Q
    |||||||||||||||||||||||   | |||||||||||| |||||||||||||    
T  8241491 ttcgtcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 13462775 - 13462819
Alignment:
Q  296 tttcagacgaaatttcaacaaagaggttactttgaagtacctcat 340  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  13462775 tttcagacgaaatttggataaagaggttactttgaagtacctcat 13462819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 22460026 - 22460071
Alignment:
Q  296 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 341  Q
    ||||| |||||||||| ||| ||||||||||||| |||||||||||    
T  22460026 tttcaaacgaaatttcgacagagaggttactttggagtacctcatt 22460071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 217 - 352
Target Start/End: Original strand, 33298085 - 33298219
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33298085 tgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 33298184  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    ||| ||||||||||||||||||||||||||||||||    
T  33298185 aga-gttactttgaagtacctcattttttattccga 33298219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 217 - 346
Target Start/End: Complemental strand, 15391676 - 15391547
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  15391676 tgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgacaa 15391577  T
Q  317 agaggttactttgaagtacctcatttttta 346  Q
    ||||||||||||||||||||||||||||||    
T  15391576 agaggttactttgaagtacctcatttttta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 5004060 - 5004206
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  5004060 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 5004159  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    | ||||||||||||||||||||||||||| ||||||| || ||||||    
T  5004160 aggaggttactttgaagtacctcatttttgattccgagtcggaccct 5004206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 217 - 352
Target Start/End: Original strand, 13825703 - 13825838
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||     
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacag 13825802  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    |||||||||||||||||||||||||||| |||||||    
T  13825803 agaggttactttgaagtacctcatttttgattccga 13825838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 30824594 - 30824459
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    |||||||||||||||||||||||||||| |||||||    
T  30824494 agaggttactttgaagtacctcatttttgattccga 30824459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 35091742 - 35091596
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||   ||    
T  35091742 atgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggca 35091643  T
Q  316 aagaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    | ||||||||||||||||||||||||||||||| |||||| ||||||    
T  35091642 aggaggttactttgaagtacctcattttttatttcgaatcggaccct 35091596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 216 - 352
Target Start/End: Original strand, 25550294 - 25550430
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||    
T  25550294 atgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggca 25550393  T
Q  316 aagaggttactttgaagtacctcattttttattccga 352  Q
     ||||||||||||||||||||||||||||||||||||    
T  25550394 gagaggttactttgaagtacctcattttttattccga 25550430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 11279837 - 11279982
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  11279937 agaggttactttgaagtacctcattttttattccgagtcggaccct 11279982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 5994699 - 5994827
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||   |||    
T  5994699 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggcaa 5994798  T
Q  317 agaggttactttgaagtacctcatttttt 345  Q
    |||||||||||||||||||||||||||||    
T  5994799 agaggttactttgaagtacctcatttttt 5994827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 219 - 362
Target Start/End: Original strand, 25991852 - 25991995
Alignment:
Q  219 tcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaag 318  Q
    ||||||| ||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||   | ||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  319 aggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    ||||||||||||||||||||||||||||||| || || ||||||    
T  25991952 aggttactttgaagtacctcattttttattcagagtcggaccct 25991995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 25506606 - 25506461
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||     
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||| || |||||||||||| ||||||| |||| ||||    
T  25506506 agaggttactttaaaatacctcatttttgattccgagtcaggccct 25506461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 23925335 - 23925481
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| || |||  |||||||||||   |     
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtag 23925434  T
Q  317 agaggttactttgaagtacctcatttttt-attccgaatcagaccct 362  Q
    ||| ||||||||||||||||||||||||| ||||||| |||| ||||    
T  23925435 agatgttactttgaagtacctcattttttgattccgagtcaggccct 23925481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 276 - 353
Target Start/End: Complemental strand, 26526708 - 26526631
Alignment:
Q  276 aaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccgaa 353  Q
    ||||||||||||||||||||||||||||||||| ||  || || |||||||||||| ||||||||||||  |||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcatttttggttccgaa 26526631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 13490193 - 13490284
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaat 308  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||| | ||||  |||||||||||||  |||||||| ||||    
T  13490193 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatctgtaaaaccgggaattttcgttatttcagacaaaat 13490284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 5489185 - 5489132
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgt 269  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||||||||    
T  5489185 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 5489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 309
Target Start/End: Original strand, 11053702 - 11053794
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcc-tattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatt 309  Q
    ||||||||| |||||||||||||||||| |||||  || ||  ||||||||||||||||||||  |  ||||||||||  ||||||||||||||    
T  11053702 tgtcataccccaaattttgaccacttttttctatttttaccaaattttattcgtatttttaaa-accagaattttcgttatttcagacgaaatt 11053794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 14894939 - 14894998
Alignment:
Q  284 gaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    ||||||| |||| ||||||||| |||||  ||||||  ||||||||||||||||||||||    
T  14894939 gaatttttgtcgcttcagacgatatttcggcaaagaaattactttgaagtacctcatttt 14894998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 33035 - 33180
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||    
T  33135 agaggttactttaaagtacctcattttttattccgagtcggaccct 33180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 149 - 4
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  317 agaggttactttgaagtacctcattttttattccgaatcagaccct 362  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  49 agaggttactttgaagtacctcattttttattccgagtcggaccct 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 15813 - 15941
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||  || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||     
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  317 agaggttactttgaagtacctcatttttt 345  Q
    |||||||||||||||||||||||||||||    
T  15913 agaggttactttgaagtacctcatttttt 15941  T

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Target: scaffold0002 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 217 - 352
Target Start/End: Original strand, 121228 - 121363
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||   |     
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    ||||||||||||||||||  |||||||| |||||||    
T  121328 agaggttactttgaagtaaatcatttttgattccga 121363  T

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Target: scaffold0497 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 10993 - 11119
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||  ||     
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  317 agaggttactttgaagtacctcatttt 343  Q
    |||||||||||||||||||||||||||    
T  11093 agaggttactttgaagtacctcatttt 11119  T

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Target: scaffold0632 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 4390 - 4518
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||   |||||||||| ||| || ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||     
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  317 agaggttactttgaagtacctcatttttt 345  Q
    |||||||||||||||||||||||||||||    
T  4490 agaggttactttgaagtacctcatttttt 4518  T

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Target: scaffold0016 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 217 - 352
Target Start/End: Original strand, 23464 - 23600
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttt-taaagtcgggaattttcgtcgtttcagacgaaatttcaaca 315  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||| || |||| |||||||||||   |    
T  23464 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggta 23563  T
Q  316 aagaggttactttgaagtacctcattttttattccga 352  Q
     |||||||||||||||||||||||||||| |||||||    
T  23564 gagaggttactttgaagtacctcatttttgattccga 23600  T

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Target: scaffold0173 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 994 - 859
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||  ||||||||| ||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||||  ||     
T  994 tgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggcag 895  T
Q  317 agaggttactttgaagtacctcattttttattccga 352  Q
    | ||||||||||||| |||||||||||| |||||||    
T  894 aaaggttactttgaaatacctcatttttgattccga 859  T

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Target: scaffold0039 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 217 - 328
Target Start/End: Complemental strand, 40898 - 40787
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||||||||||||||||||| | |||||| |||||||||||||||| || ||||    
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaatctcgacaa 40799  T
Q  317 agaggttacttt 328  Q
    ||||||||||||    
T  40798 agaggttacttt 40787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 139 - 264
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||||| | | |||||||||  |||||||||||||||| || |    
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 238  T
Q  317 agaggttactttgaagtacctcattt 342  Q
    |||| |||||||||||||||||||||    
T  239 agagtttactttgaagtacctcattt 264  T

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Target: scaffold0170 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 217 - 343
Target Start/End: Complemental strand, 7255 - 7129
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    |||||||||  ||||||||||||||||||||| |  || || |||||||| ||| |||||||| || |||||||||| |||||||||||||||||   |     
T  7255 tgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgggag 7156  T
Q  317 agaggttactttgaagtacctcatttt 343  Q
      |||||||||||||||||||||||||    
T  7155 gaaggttactttgaagtacctcatttt 7129  T

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Target: scaffold0222 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 20547 - 20422
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 316  Q
    ||||||||| |||||||||||||||||||| |    || |  ||||| |||||| |||||||| || |||||||||| |||||||||||||||||  ||     
T  20547 tgtcataccccaaattttgaccacttttctatggttttacacattttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcag 20448  T
Q  317 agaggttactttgaagtacctcattt 342  Q
    ||||||||||||| ||||||||||||    
T  20447 agaggttactttggagtacctcattt 20422  T

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Target: scaffold0027 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 65701 - 65622
Alignment:
Q  285 aattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt-ttttattccgaatcagaccctt 363  Q
    ||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| || |||||||    
T  65701 aattttcgttgtttcggacgaaatttcgacaaagatgttactttgaagtacctcatttttttattccgagtcggaccctt 65622  T

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Target: scaffold0027; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 65510 - 65470
Alignment:
Q  489 tgtcaataagtccgaaggttttcggcagtggtccaaatttc 529  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  65510 tgtcaatgagtccgaaagttttcggcagtggtccaaatttc 65470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  287 ttttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

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Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 192528 - 192623
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttca 312  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||||    
T  192528 tgtcataccccaaattttgaccacttttctctatttttacagattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttca 192623  T

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Target: scaffold0290 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 15837 - 15760
Alignment:
Q  266 tcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||| |   | | |||||||||||||||||||||||||    
T  15837 tcgtctttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

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Target: scaffold0991 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 438 - 345
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattt 310  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaattt 345  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 7620 - 7587
Alignment:
Q  317 agaggttactttgaagtacctcattttttattcc 350  Q
    ||||||||||||||||||||||||||||||||||    
T  7620 agaggttactttgaagtacctcattttttattcc 7587  T

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Target: scaffold0048; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 7695 - 7622
Alignment:
Q  216 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattt 289  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||| ||    ||||||||||| |||||||    
T  7695 atgtcataccccaaattttgaccacttttctctattcttacccatttttttgcattttttaaagtcaggaattt 7622  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 81851 - 81758
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattt 310  Q
    |||||||||  |||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||    
T  81851 tgtcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaattt 81758  T

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Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 65603 - 65509
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| |||||||||  |||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  65603 tgtcataccccaaattttgtacacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 65509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 61371 - 61418
Alignment:
Q  296 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    ||||| || |||||||| || |||||||||||||||||||||||||||    
T  61371 tttcaaacaaaatttcagcatagaggttactttgaagtacctcatttt 61418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 437 - 343
Alignment:
Q  217 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 311  Q
    ||||||||| |||||||||||||||||||| |||  || |  ||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||||    
T  437 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaatttc 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1380 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1380
Description:

Target: scaffold1380; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 556 - 597
Alignment:
Q  302 acgaaatttcaacaaagaggttactttgaagtacctcatttt 343  Q
    |||||||||| ||| ||||||||||||| |||||||||||||    
T  556 acgaaatttcgacagagaggttactttggagtacctcatttt 597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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