View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0502_low_4 (Length: 378)
Name: NF0502_low_4
Description: NF0502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0502_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 20648763 - 20649100
Alignment:
| Q |
20 |
gacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| | | ||||||||||||| |
|
|
| T |
20648763 |
gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcctattgaagggtttaatttcatctaccccaaagatgtaacca |
20648862 |
T |
|
| Q |
120 |
tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20648863 |
tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
20648962 |
T |
|
| Q |
220 |
tataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
319 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20648963 |
tataaatgtaaacaacttttgtatcgtggccaactaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
20649062 |
T |
|
| Q |
320 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20649063 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
20649100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 20632667 - 20633001
Alignment:
| Q |
20 |
gacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||| | ||||||||||||| |
|
|
| T |
20632667 |
gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcttattgaagtgtttaaaatcatatcccccaaagatgtaacca |
20632766 |
T |
|
| Q |
120 |
tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20632767 |
tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
20632866 |
T |
|
| Q |
220 |
tataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
319 |
Q |
| |
|
||||||||||||||| ||| ||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20632867 |
tataaatgtaaacaa---ttgtatcgtggccagcgaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
20632963 |
T |
|
| Q |
320 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20632964 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
20633001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1291 times since January 2019
Visitors: 3440