View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0502_low_5 (Length: 358)
Name: NF0502_low_5
Description: NF0502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0502_low_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 34 - 266
Target Start/End: Complemental strand, 8994569 - 8994337
Alignment:
| Q |
34 |
gctaccatcgtcatcatgatcaacacgaacttgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctccacctcatca |
133 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8994569 |
gctaccatcgtcatcatgatcaacacgaactcgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctcctcctcatca |
8994470 |
T |
|
| Q |
134 |
tcatcatccacaagaactgaatagtcaacatcaatcaaatgctcctttttaacataattagtattttcatcgttgatggaagcactaacatcataattat |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| || |
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| T |
8994469 |
tcatcatccacaagaactgaatagtcaacatcaatcaaatgctcctttttaacattattagtattttcatcattgattgaagcactaacatcataatcat |
8994370 |
T |
|
| Q |
234 |
caaggttgaggaggcagttatccacaaccgcag |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
8994369 |
caaggttgaggaggcagttatccacaaccgcag |
8994337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 266
Target Start/End: Complemental strand, 9029226 - 9028994
Alignment:
| Q |
34 |
gctaccatcgtcatcatgatcaacacgaacttgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctccacctcatca |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9029226 |
gctaccatcgtcatcatgatcaacacgaactcgaatttcaggaagattagcaactgattaattaaacatgttctcctcctcctcttcctcctcctcatca |
9029127 |
T |
|
| Q |
134 |
tcatcatccacaagaactgaatagtcaacatcaatcaaatgctcctttttaacataattagtattttcatcgttgatggaagcactaacatcataattat |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| || |
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| T |
9029126 |
tcatcatccacaagaactgaatagtcaacatcaatcaaatgctcctttttaacattattagtattttcatcattgattgaagcactaacatcataatcat |
9029027 |
T |
|
| Q |
234 |
caaggttgaggaggcagttatccacaaccgcag |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
9029026 |
caaggttgaggaggcagttatccacaaccgcag |
9028994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 9007329 - 9007172
Alignment:
| Q |
34 |
gctaccatcgtcatcatgatcaacacgaacttgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctccacctcatca |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
9007329 |
gctaccatcgtcatcatgatcaacacgaactcgaatttcaggaagattagcaactgaataattaaacatgttctcct---cctcttcct---cctcatca |
9007236 |
T |
|
| Q |
134 |
tcatcatccacaagaactgaatagtcaacatcaatcaaatgctcctttttaacataattagtat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
9007235 |
tcatcatccacaagaactgaatagtcaacatcaatcaaatgctcctttttaacattattagtat |
9007172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 44884032 - 44884150
Alignment:
| Q |
140 |
tccacaagaactgaatagtcaacatcaatcaaatgctcctttttaacataatta---gtattttcatcgttgatggaagcactaacatcataattatcaa |
236 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||||||||||| |||||| |||| |||||||| || || | |||||||||| |||||||| ||| | |
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| T |
44884032 |
tccacaggcactgaataatcaacatcaatcaaatgctccttgataacattattattagtattttcgtcattacttgaagcactaatatcataatcatcga |
44884131 |
T |
|
| Q |
237 |
ggttgaggaggcagttatc |
255 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
44884132 |
ggttgaggaggcagttatc |
44884150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 44883985 - 44884027
Alignment:
| Q |
75 |
gaagattagcaactgaataattaaacatgttctcctcctcctc |
117 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
44883985 |
gaagattagcaattgaataattaaacatgttcttctcctcctc |
44884027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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